View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_high_11 (Length: 379)
Name: NF15544_high_11
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 59 - 344
Target Start/End: Complemental strand, 16579052 - 16578767
Alignment:
| Q |
59 |
ctattcaacatgcaacaaatttcattataatatgataattatgatctataaatacatagtcactcacataacattcactcataactcataacaacaattt |
158 |
Q |
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| T |
16579052 |
ctattcaacatgcaacaaatttcattataatatgataattatgatctataaatacatagtcactcacataacattcactcataactcataacaacaattt |
16578953 |
T |
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| Q |
159 |
ctacacaaactctnnnnnnntttggtttttcacttgcttaagaatcaacattatgggagccaacttttccaatttagaatctgttgtcgagaaatcatca |
258 |
Q |
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| T |
16578952 |
ctacacaaactctaaaaaaatttggtttttcacttgcttaagaatcaacattatgggagccaacttttccaatttagaatctgttgtcgagaaatcatca |
16578853 |
T |
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| Q |
259 |
cagccatcgctcatccttaccttccactcaactgctaaatggaaggctcactttgaggcttccaaagtaacaaacaagctggtata |
344 |
Q |
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| T |
16578852 |
cagccatcgctcatccttaccttccactcaactgctaaatggaaggctcactttgaggcttccaaagtaacaaacaagctggtata |
16578767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 16572575 - 16572508
Alignment:
| Q |
274 |
cttaccttccactcaactgctaaatggaaggctcactttgaggcttccaaagtaacaaacaagctggt |
341 |
Q |
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| T |
16572575 |
cttaccttccattccactgctaaatggaaggcttactttgatgcctccaaagaaactaacaagctggt |
16572508 |
T |
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