View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_high_15 (Length: 339)
Name: NF15544_high_15
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 31005962 - 31005629
Alignment:
| Q |
1 |
actttttaatcaataataccattaatgattttttgcaaaattgtttatatgcaggtctaaacttctttcaannnnnnnnnnnnnnnnnngtattgacatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
31005962 |
actttttaatcaataataccattaatgattttttgcaaaattgtttatatgcaggtataaacttctttcaatttttcttttttctttttgtattgacatg |
31005863 |
T |
|
| Q |
101 |
atcattgtctgcatgcagcatgtttcccaaatcaactcatgaaacattttcaacaaagctttatcagacattcaaagatcacaaacgcttcatcaagcca |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31005862 |
atcattgcctgcatgcagcatgtttcccaaatcaactcatgaaacattttcaacaaagctttatcagacattcaaagatcacaaacgcttcatcaagcca |
31005763 |
T |
|
| Q |
201 |
aaattggcacgctcagacttcactgttgttcattatgcaggagtggtgagtttgattcttcatcgggtctatgcaagatgctatttttcactatggtttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31005762 |
aaattggcacgctcagacttcactgttgttcattatgcaggagtggtgagtttgattcttcatcgggtctgtgcaagatgctatttttcactatggtttt |
31005663 |
T |
|
| Q |
301 |
tgctttagtctgttatttgtgcatttcttttcag |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
31005662 |
tgctttagtctgttatttgtgcatttcttttcag |
31005629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 334
Target Start/End: Complemental strand, 31183040 - 31182730
Alignment:
| Q |
21 |
attaatgattttttgcaaaattgtttatatgcaggtctaaacttctttcaannnnnnnnnnnnnnnnnngtattgacatgatcattgtctgcatgcagca |
120 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31183040 |
attaatgattttttgcaaaattgttcatatgcaggtctaaacttctttcaattttttatttttttt---gtattgacatgatcattgtctgcatgcagca |
31182944 |
T |
|
| Q |
121 |
tgtttcccaaatcaactcatgaaacattttcaacaaagctttatcagacattcaaagatcacaaacgcttcatcaagccaaaattggcacgctcagactt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31182943 |
tgtttcccaaatcaactcatgaaacattttcaacaaagctttatcagacattcaaagatcacaaacgcttcatcaagccaaaattggcacgctcagactt |
31182844 |
T |
|
| Q |
221 |
cactgttgttcattatgcaggagtggtgagtttgattcttcatcgggtctatgcaagatgctatttttcactatggtttttgctttagtctgttatttgt |
320 |
Q |
| |
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|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| ||||| |
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| T |
31182843 |
caatgttgttcattatgcaggggtggtgagtttgattcttcatcgtgtctatgcaagataccatttttcactatggtttttgctttagtctgttttttgt |
31182744 |
T |
|
| Q |
321 |
gcatttcttttcag |
334 |
Q |
| |
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| |||||||||||| |
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| T |
31182743 |
gtatttcttttcag |
31182730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 35827100 - 35827008
Alignment:
| Q |
114 |
tgcagcatgtttcccaaatcaactcatgaaacattttcaacaaagctttatcagacattcaaagatcacaaacgcttcatcaagccaaaattg |
206 |
Q |
| |
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|||||||||||||| || ||||| |||||||||||| ||| ||||||||||| ||||| || || |||| ||||| || |||||||||||| |
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| T |
35827100 |
tgcagcatgtttccaaagtcaacacatgaaacatttgcaaacaagctttatcaaacatttaagaataacaagcgctttattaagccaaaattg |
35827008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 47696462 - 47696587
Alignment:
| Q |
116 |
cagcatgtttcccaaatcaactcatgaaacattttcaacaaagctttatcagacattcaaagatcacaaacgcttcatcaagccaaaattggcacgctca |
215 |
Q |
| |
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|||||||||||| || ||||| |||||||||||||| | ||||||||||| ||||| || ||||||| ||||| || || ||||||||| | || || |
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| T |
47696462 |
cagcatgtttccgaagtcaacacatgaaacattttcgaacaagctttatcaaacatttaagaatcacaagcgctttattaaaccaaaattgtctcgaaca |
47696561 |
T |
|
| Q |
216 |
gacttcactgttgttcattatgcagg |
241 |
Q |
| |
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|| || ||| ||| |||||||||||| |
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| T |
47696562 |
gattttactattgctcattatgcagg |
47696587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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