View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_high_17 (Length: 322)
Name: NF15544_high_17
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 41885562 - 41885858
Alignment:
| Q |
14 |
caattatttcagctcttaataccctagacttaaccactctacttcaacaacattaaaacctcttgtcaaattaaattagttcaaaccccaaatgttccac |
113 |
Q |
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| T |
41885562 |
caattatttcagctcttaataccctagacttaaccactctacttcaacaacattaaaacctcttgtcaaattaaattagttcaaaccccaaatgttccac |
41885661 |
T |
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| Q |
114 |
ctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgttagtacccactgtactggaatcccttgtttcatcaatatgctcta |
213 |
Q |
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| T |
41885662 |
ctcataattttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgttagtatccactgtactggaatcccttgtttcatcaatatgctcta |
41885761 |
T |
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| Q |
214 |
atgttcactctcaatatcatgcttaactaagcaagaattgtatactttttcctgtgggatttgcttaagactacaggccattatcagaccggccttc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41885762 |
atgttcactctcaatatcatgcttaactaagcaagaattgtatactttttcctgtgggatttgcttaagactacaggccattatcagaccggccttc |
41885858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 38605957 - 38605886
Alignment:
| Q |
238 |
aactaagcaagaattgtatactttttcctgtgggatttgcttaagactacaggccattatcagaccggccttc |
310 |
Q |
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| T |
38605957 |
aactaaggaagaatgacatactttttc-tgtgggatttgcttaagaatattggccattatcaaaccggccttc |
38605886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 38606125 - 38606068
Alignment:
| Q |
69 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttat |
126 |
Q |
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| T |
38606125 |
aaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat |
38606068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 40181645 - 40181588
Alignment:
| Q |
69 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttat |
126 |
Q |
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| T |
40181645 |
aaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttat |
40181588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 44459281 - 44459430
Alignment:
| Q |
69 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
168 |
Q |
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| T |
44459281 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
44459380 |
T |
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| Q |
169 |
tagtacccactgtactggaatcccttgtttcatcaatatgctctaatgttc |
219 |
Q |
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| T |
44459381 |
cactaccc-ctgttctggaatcccttgtttcatcaatatgctctactgttc |
44459430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 44466814 - 44466963
Alignment:
| Q |
69 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
168 |
Q |
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| T |
44466814 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
44466913 |
T |
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| Q |
169 |
tagtacccactgtactggaatcccttgtttcatcaatatgctctaatgttc |
219 |
Q |
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| T |
44466914 |
cactaccc-ctgttctggaatcccttgtttcatcaatatgctctactgttc |
44466963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 46358852 - 46358991
Alignment:
| Q |
69 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
168 |
Q |
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| T |
46358852 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
46358951 |
T |
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| Q |
169 |
tagtacccactgtactggaatcccttgtttcatcaatatgc |
209 |
Q |
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| T |
46358952 |
cactaccc-ctgttctggaatcccttgtttcagaaatatgc |
46358991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 410254 - 410290
Alignment:
| Q |
27 |
tcttaataccctagacttaaccactctacttcaacaa |
63 |
Q |
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||||||| |||| |||||||||||||||||||||||| |
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| T |
410254 |
tcttaatgcccttgacttaaccactctacttcaacaa |
410290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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