View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_high_33 (Length: 215)
Name: NF15544_high_33
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 7143529 - 7143332
Alignment:
| Q |
7 |
caaaatttgtcctactagccaaaacatcgtggtctacaaaattcaatctcattcggctatttttcctttttctaacatgttatttgttcttttt-aggta |
105 |
Q |
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| T |
7143529 |
caaaatttgtcctactagccaaaacattgtggtctacaaaattcaatctcattcggctatttttcctttttctaacatgttatttgttcttttttaggca |
7143430 |
T |
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| Q |
106 |
aaggctcaattgtagttgaatcagaagaaaataaggagtgtttcgtttctaagaaaagaccacgacccaatttaatcaagactaatgaaccatctgat |
203 |
Q |
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| T |
7143429 |
aaggctcaattgtagttgaatcagaagaaaatgaggagtgtttggtttctaagaaaagaccaagacccaatttaatcaagactaatgaaccatctgat |
7143332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 7162359 - 7162250
Alignment:
| Q |
65 |
atttttcctttttctaacatgttatttgttctttttaggtaaaggctcaattgtagttgaatcagaagaaaataaggagtgtttcgtttctaagaaaaga |
164 |
Q |
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| T |
7162359 |
attttgccctttcctaacttattatttgttccttttaggtaaaggcccaattgtaattgatttagaagaaaacaaggagtctttgatttctaaaaaaaga |
7162260 |
T |
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| Q |
165 |
ccacgaccca |
174 |
Q |
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| T |
7162259 |
ccaagaccca |
7162250 |
T |
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