View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_high_4 (Length: 517)
Name: NF15544_high_4
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 498
Target Start/End: Original strand, 52477516 - 52477999
Alignment:
| Q |
11 |
cagagaagtgtcttgcgttttgttttgaagatgcaattgtgactagaagtgataaggaacataagttccaaggacaaaaccagcatgagagtcagagtca |
110 |
Q |
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| T |
52477516 |
cagagaagtgtcttgcgttttgttttgaagatgcaattgtgactagaagtgataaggaacataagttccaaggacaaaaccagcatgagagtcag--tca |
52477613 |
T |
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| Q |
111 |
aaaataaatcaagtgaaataacggatttggttaccggaggcggcgaagtcggacaaattcatagacacctttggtactgttgatggcagccatgaagtgc |
210 |
Q |
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| T |
52477614 |
aaaataaatcaagtgaaataacggatttggttaccggaggcggcgaagtcggacaaattcatagacacctttggtactgttgatggcagccatgaagtgc |
52477713 |
T |
|
| Q |
211 |
agtgtctctcctatgaagggtaatcctcgatttcccggaggaatgccaacactacaactgcacttgttgtttttgcaccaaagtgcacacacttttaaag |
310 |
Q |
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| T |
52477714 |
agtgtctctcctatgaagggtaatcctcgatttcccggaggaatgccaacactacgactgcacttgttgtttttgcaccaaagtgcacacacttttaaag |
52477813 |
T |
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| Q |
311 |
atgataaaaacaccaataagaaaccaacaaagtaaggatgttcttttactaattgggaaagcattttgattcatctgcttctttgaaaccacctaagtgc |
410 |
Q |
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| T |
52477814 |
atgataaaaacaccaataagaaaccaacaaagtaaggatgttcttttactaattgggaaagcattttgattcatctgcttctttgaaaccacctaagtgc |
52477913 |
T |
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| Q |
411 |
--tatatatataagcaagtatacaacattaaagtagttttgcatcctcacaatattcacgtgagatatatatggtatagaagaaagtcat |
498 |
Q |
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| T |
52477914 |
tatatatatataagcaagtatacaacattaaagtagttttgcatcctcacaatattcacgtgag----atatggtatagaagaaagtcat |
52477999 |
T |
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