View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_high_6 (Length: 448)
Name: NF15544_high_6
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 39006187 - 39005893
Alignment:
| Q |
13 |
attctcattttgttgtgtagccattaatcaaacaatgttgatattctaagtactaataattattccctatctcccttgtacaatacttaaccaactaaca |
112 |
Q |
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| T |
39006187 |
attctcattttgttgtgtagccattaatcaaacaatgttgatattctaagtactaataattattcactatctcccttgtacaatacttaaccaactaaca |
39006088 |
T |
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| Q |
113 |
ccactacaacaccaaacaagtccttttttgctgatctaaaaactctgtccttccacttaaagaaacagaaagctaaatgcaataatgttcaagttaaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39006087 |
ccactacaacaccaaacaagtccttttttgcttatctaataactctgtccttccacttaaagaaacagaaagctaaatgcaataatgttcaagttaaaag |
39005988 |
T |
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| Q |
213 |
gagtcacactaaagttggtgtcataggacttgccttattaaatgcttcacttcccctccttttcaattcaaaattcaaatttacacccctcttgc |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39005987 |
gagtcacactaaagttggtgccataggacttgccttattaaatgcttcacttcccctccttttcaattcaaaattcaaatttacacccctcttgc |
39005893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 371 - 434
Target Start/End: Complemental strand, 39005829 - 39005766
Alignment:
| Q |
371 |
aagtgaaggaaatataatagaagcatgcagtgatggaaacaataaaacggtagagaaaactttg |
434 |
Q |
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| T |
39005829 |
aagtgaaggaaatataatagaagcatgcagtgatggaaacaataaaacggtagagaaaactttg |
39005766 |
T |
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