View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_high_8 (Length: 445)
Name: NF15544_high_8
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_high_8 |
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| [»] scaffold1572 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 21319369 - 21318947
Alignment:
| Q |
1 |
aacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21319369 |
aacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactggcaactttcaaattactctcccagctgcatggactgaagtag |
21319270 |
T |
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| Q |
101 |
caaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaccgtaagttataactaatagc |
200 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21319269 |
caaaaacagtacacgtcagaaaggtttatatagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaacgtaagttataactaatagc |
21319170 |
T |
|
| Q |
201 |
agaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatctccaacacag |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21319169 |
agaaaaccaagggaggcatttgggttcaagcaccattgggctatgtgattcaagaaatagatgagacaccgtttcttctcctccacaatttccaacacag |
21319070 |
T |
|
| Q |
301 |
ctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatatctttgacg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21319069 |
ctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatatctttgacg |
21318970 |
T |
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| Q |
401 |
ggatcgatttattccaagctctt |
423 |
Q |
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| T |
21318969 |
ggatcgatttattccaagctctt |
21318947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 193 - 417
Target Start/End: Original strand, 1044 - 1268
Alignment:
| Q |
193 |
ctaatagcagaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatctc |
292 |
Q |
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|||| ||||||||||||||||| ||| ||||||| ||||||||||||| ||||| | || | |||| ||||||||||||||| ||||||||||||||||| |
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| T |
1044 |
ctaacagcagaaaaccaaggcaagcacttgggtttaagcaccattgggttatgtaactcaaaaaattgatgagacaccgttttttctcctccacaatctc |
1143 |
T |
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| Q |
293 |
caacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatat |
392 |
Q |
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|||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1144 |
caacacagttaagcatctcttgactaatcactcctctaatatacaaatcatcttttgtagctatcctaatttgaagcattctccataccaacatagatat |
1243 |
T |
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| Q |
393 |
ctttgacgggatcgatttattccaa |
417 |
Q |
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||||||||||||||||||||||||| |
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| T |
1244 |
ctttgacgggatcgatttattccaa |
1268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 844 - 998
Alignment:
| Q |
6 |
atacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagtagcaaaa |
105 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| ||||||||||||||||| |
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| T |
844 |
atacctccagcaat-atgaagagtcctatccaaaatctcagtagctataactaacaactttcaaattactcccacaactgcacggactgaagtagcaaaa |
942 |
T |
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| Q |
106 |
acagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
164 |
Q |
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|||||| || |||||| ||||||||||||| | ||||||||||||||||||||| |
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| T |
943 |
acagtatacgctagaaagatttatacagaaaagt---ttgcaaaaatatcagaaatcac |
998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 37963957 - 37963803
Alignment:
| Q |
1 |
aacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagtag |
100 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
37963957 |
aacaattacctccagcaattata--gagtcctatccaaaatctcagaagctataa-tgacaactttcaaattactcccccaactgcatggactgaagtag |
37963861 |
T |
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| Q |
101 |
caaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
164 |
Q |
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||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
37963860 |
caaaa----tacacgccag--agatttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
37963803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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