View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_11 (Length: 418)
Name: NF15544_low_11
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 19001827 - 19001439
Alignment:
| Q |
19 |
ttatcctccgctgatttattcattgacatatcatgtgttttcataccaaataacaatgttccaatagaaacaatgctgttaaagattcatcgcagacctt |
118 |
Q |
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| T |
19001827 |
ttatcctccgctgatttattcattgacatatcatgtgttttcataccaaataacaatgttccaatagaaacaatgctgttaaagattcatcgcagacctt |
19001728 |
T |
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| Q |
119 |
tgaacaatgtcatatagagacagcagaatttcagcaccaatcaatgcaataatgagccactcaaggaaatcagatttcctgttttgaagaatttcttgta |
218 |
Q |
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| T |
19001727 |
tgaacaatgtcatatagagacagcagaatttcagcaccaatcaatgcaataatgagccactcaaggaaatcagatttcctgttttgaagaatttcttgta |
19001628 |
T |
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| Q |
219 |
gaaatcgaatattgtgctgtaaaattaaaaaggcaaaaagttataaac--agagataaatttgtagagatgtccgaatagagaatgaagtgagaatttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19001627 |
gaaatcgaatattgtgctgtaaaattaaaaaggcaaaaagttataaacaaagagataaacttgtagagatgtccgaatagagaatgaagtgagaatttat |
19001528 |
T |
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| Q |
317 |
atatgtttccaagctagaaatttaacctccacaaatttcaacttgaaatcaagacttgcaaatctctgagttaactcaaattcgtccct |
405 |
Q |
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| T |
19001527 |
atatgtttccaagctagaaatttaacctccacaaatttcaacttgaaatcaagacttgcaaatctctgagttaactcaaattcgtccct |
19001439 |
T |
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