View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_15 (Length: 374)
Name: NF15544_low_15
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 37323132 - 37322957
Alignment:
| Q |
16 |
catgaaggtgagcaagataaacatgatagtagtaaatggtgttaggcgtagcagagccagcttgcgtgagacagagtcattaatataggaagcaaatctg |
115 |
Q |
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| T |
37323132 |
catgaaggtgagcaagataaacatgatagtagtaaatggtgttaggcgtagcagagccagcttgcgtgagacagagtcattaatatgggaagcaaatctg |
37323033 |
T |
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| Q |
116 |
cagggagagagcgtgtgatatgctttcaatttggaaagccccattgctttgcattttcttgagaaaaagagagaga |
191 |
Q |
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| T |
37323032 |
cagggagagagcgtgtgatatgctttcaatttggaaagccccattgctttgcattttcttgagaaagagagagaga |
37322957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 37322923 - 37322803
Alignment:
| Q |
183 |
agagagagaaagaatgaatgtgaatcttataggagtaatcaatatgtgtggcccgatagctagggagaacttgtagtagtacactactaccattcatcta |
282 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37322923 |
agagagagagagaatgaatgtgaatcttataggagtaa-----atgtgtggcccgatagctagggagaacttgtagtagtacactac---cattcatcta |
37322832 |
T |
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| Q |
283 |
ctctaaatttttcacttacaaaattcatt |
311 |
Q |
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| T |
37322831 |
ctctaaatttttcacttacaaaattcatt |
37322803 |
T |
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