View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_16 (Length: 374)
Name: NF15544_low_16
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 2049385 - 2049725
Alignment:
| Q |
17 |
caaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatgacttgtagatgcccgccatttgcttagggaattaaaaataactgagttatgtt |
116 |
Q |
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| T |
2049385 |
caaaggtcaaatgttgtttacaattttgttattttgaacatgccatgacttgtagatgcccgccatttgcttagggaattaaaaa-aactgagttatgtt |
2049483 |
T |
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| Q |
117 |
tggattgttatatttttatgctattctacttttactgctgttatctcacagcattgtttctaccaagcattggttagcataa-------agtcacgacgt |
209 |
Q |
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| T |
2049484 |
tggattgttatatttttatgctattctacttttactgctgttatctcacagcattgtttctactaagcattggttagcataatgtcacgagtcacgacat |
2049583 |
T |
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| Q |
210 |
gttatttaggtgaagtcactacgtcttgtttagacacataatatatgttcgcacttttaccggtgtggagggtttggtctaatagaaaaggctagattct |
309 |
Q |
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| T |
2049584 |
gttttttaggtgaagtcacgacgtcttgtttagacac--aatatatgttcgcacttttaccg--gtggagggtttggtctaatagaaaaggctaggctct |
2049679 |
T |
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| Q |
310 |
cataacaaagtgaattaaggtttaaatcttggtcggaataagtgtt |
355 |
Q |
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| T |
2049680 |
tataacaaagtgaattgaggtttgaatcttggttggaataagtgtt |
2049725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 2059645 - 2059728
Alignment:
| Q |
17 |
caaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatgacttgtagatgcccgccatttgcttagggaattaaaaa |
101 |
Q |
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| T |
2059645 |
caaaggttaaatgttgtttacaatattgttaatttgaatatgccactatttgtagatg-ccaccatttgcttagggatttaaaaa |
2059728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 2103486 - 2103533
Alignment:
| Q |
17 |
caaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatga |
64 |
Q |
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| T |
2103486 |
caaaggtcgaatgttgtttacaattttgtcaatttgaacatgccatga |
2103533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 2055485 - 2055534
Alignment:
| Q |
17 |
caaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatgactt |
67 |
Q |
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| T |
2055485 |
caaaggtcaattgttgtttacaattttg-taatttgaacatgccatgactt |
2055534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 2042757 - 2042813
Alignment:
| Q |
17 |
caaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatgacttgtagat |
73 |
Q |
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| T |
2042757 |
caaaggtcaaatgttgtttacaatttcatcaatttgtacgtgccacgacttgtagat |
2042813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 39182211 - 39182164
Alignment:
| Q |
17 |
caaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatga |
64 |
Q |
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| T |
39182211 |
caaaagtcaaatgttgtttacaattttgtcaatttgaacatgccatga |
39182164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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