View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_17 (Length: 360)
Name: NF15544_low_17
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 45110359 - 45110696
Alignment:
| Q |
16 |
aaatgcagccggatattcaggaatcatggctcgggttttggctcagtcgattaatgttcctggcctagtggttgggcacaagcaaagtcaacataaggga |
115 |
Q |
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| T |
45110359 |
aaatgcagccggatattcaggaatcatggctcgggttttggctcagtcgattaatgttcctggcctagtggttgggcacaagcaaagtcaacataaggga |
45110458 |
T |
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| Q |
116 |
tcgggaaaatctaaaagatcagttaaaatgatgtgtgcttcgcaaacaagtggattaagaatgcctggtttctcaggacttcgtaccatcaatcatttgg |
215 |
Q |
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| T |
45110459 |
tcgggaaaatctaaaagatcagttaaaatgatgtgtgcttcgcgaacaattggattaagaatgcctggtttctcaggacttcgtaccatcaatcatttgg |
45110558 |
T |
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| Q |
216 |
atactatgctgagacctggactagattttcatgccaaggtatcaatggcaatttcttcacggcgggcaagggctaagagaatcatacctagagccatgtt |
315 |
Q |
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| T |
45110559 |
atactatgctgagacctggactagattttcatgccaaggtatcaatggcaatttcttcacggcgggcaagggctaagagaatcatacctagagccatgtt |
45110658 |
T |
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| Q |
316 |
tgagcgtttcacagagaaagcaatcaaagtgatgatgt |
353 |
Q |
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| T |
45110659 |
tgagcgtttcacagagaaagcaatcaaagtgataatgt |
45110696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 47378940 - 47378982
Alignment:
| Q |
303 |
ctagagccatgtttgagcgtttcacagagaaagcaatcaaagt |
345 |
Q |
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| T |
47378940 |
ctagagccatgtttgagcgtttcacggagaaagcaatcaaagt |
47378982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 47378652 - 47378708
Alignment:
| Q |
30 |
attcaggaatcatggctcgggttttggctcagtcgattaatgttcctggcctagtgg |
86 |
Q |
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| T |
47378652 |
attccggaatcatgtctagggttttggcacagtcgattaatgtccccggcctagtgg |
47378708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 40241750 - 40241803
Alignment:
| Q |
33 |
caggaatcatggctcgggttttggctcagtcgattaatgttcctggcctagtgg |
86 |
Q |
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| T |
40241750 |
caggaatcatgtctagggctttggcgcagtcgattaatgtccctggtctagtgg |
40241803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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