View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15544_low_18 (Length: 353)

Name: NF15544_low_18
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15544_low_18
NF15544_low_18
[»] chr4 (1 HSPs)
chr4 (1-331)||(27692640-27692970)
[»] chr1 (11 HSPs)
chr1 (138-282)||(9464469-9464613)
chr1 (144-282)||(8921053-8921191)
chr1 (142-282)||(8942372-8942512)
chr1 (142-282)||(8964867-8965007)
chr1 (142-282)||(9104606-9104746)
chr1 (146-282)||(9488909-9489045)
chr1 (221-282)||(9233674-9233735)
chr1 (155-262)||(8873703-8873810)
chr1 (144-282)||(8932458-8932596)
chr1 (203-281)||(8956439-8956517)
chr1 (142-282)||(9320257-9320397)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 27692640 - 27692970
Alignment:
Q  1 aggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatgtcgtaaattttctcatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  27692640 aggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatgtcgtagattttctcgtag 27692739  T
Q  101 cttaacgacgacaagtgtccttgctcttgtgaaaacgtgtgtttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcgg 200  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27692740 cttaacgacgacaagtgtccttgctcatgtgaaaacatgtgtttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcag 27692839  T
Q  201 cacaaaatccaaccagttgcaccacattcacatgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccattggtttgagacttattcaa 300  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  27692840 cacagaatccaaccagttgcaccacgttcacatgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccattggtttgagacttggtcaa 27692939  T
Q  301 taccttaacagctactttgcgtttgcttcgt 331  Q
    ||||||||||||||||||| |||||||||||    
T  27692940 taccttaacagctactttgtgtttgcttcgt 27692970  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 282
Target Start/End: Original strand, 9464469 - 9464613
Alignment:
Q  138 tgtgtttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacg 237  Q
    ||||||| ||||||||| | |||||||||||||| ||||| || |||   |||||| | ||  ||||||| ||||  || || |||||||| |||||  |    
T  9464469 tgtgtttttcaagagaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacattaacatggtg 9464568  T
Q  238 aattcttccaatggttgcaacttcattgatgaagtcttgtccatt 282  Q
    |||  |||||||||| ||||||||||||||||| || ||||||||    
T  9464569 aatcgttccaatggtagcaacttcattgatgaattcctgtccatt 9464613  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 8921053 - 8921191
Alignment:
Q  144 tatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattct 243  Q
    |||||||||| ||||| |||||||| || ||||| |||||  | |||| ||  ||  ||||||||||||| ||| ||||||||||  | ||| | ||| |    
T  8921053 tatcaagagagccatttggcatgaaatcataaacaagagcacgttttgatccctcaacacaaaatccaacaagtcgcaccacattggcgtgatgtatttt 8921152  T
Q  244 tccaatggttgcaacttcattgatgaagtcttgtccatt 282  Q
    ||| ||||||||||||||||| ||||| ||||| |||||    
T  8921153 tcctatggttgcaacttcattaatgaaatcttgcccatt 8921191  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 282
Target Start/End: Original strand, 8942372 - 8942512
Alignment:
Q  142 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 241  Q
    |||||||||||| ||||| |||||||| || ||||| ||||||   |||| ||  ||  ||||||||||||  ||| ||||||||||    ||| | |||    
T  8942372 tttatcaagagagccattgggcatgaaatcataaacaagagctctttttgatccctcaacacaaaatccaataagtcgcaccacattggtgtgatgtatt 8942471  T
Q  242 cttccaatggttgcaacttcattgatgaagtcttgtccatt 282  Q
    ||||| || |||||||||||||||||||| ||||| |||||    
T  8942472 cttcctattgttgcaacttcattgatgaaatcttgcccatt 8942512  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 282
Target Start/End: Original strand, 8964867 - 8965007
Alignment:
Q  142 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 241  Q
    ||||||||| || ||||||| |||||| || ||||| |||||  | |||| ||  ||| ||||||| ||||  | |||||||||||||| |||| | ||     
T  8964867 tttatcaagggatccattagacatgaattcataaacaagagcacggtttgatccctcgacacaaaaaccaattaattgcaccacattcaaatgatgtatc 8964966  T
Q  242 cttccaatggttgcaacttcattgatgaagtcttgtccatt 282  Q
    |||||||||||||| |||||||| || ||||| || |||||    
T  8964967 cttccaatggttgctacttcattaataaagtcctgcccatt 8965007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 282
Target Start/End: Complemental strand, 9104746 - 9104606
Alignment:
Q  142 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 241  Q
    |||||||||||| |||||||||||||| || ||||| |||||  | |||| ||  ||   |||||||||||  | ||| || ||||||| |||| | ||     
T  9104746 tttatcaagagatccattaggcatgaattcataaacaagagcacgttttgatccctcaatacaaaatccaaataattgtactacattcaaatgatgtatc 9104647  T
Q  242 cttccaatggttgcaacttcattgatgaagtcttgtccatt 282  Q
    |||||||||||||| |||||| | || ||||||||||||||    
T  9104646 cttccaatggttgctacttcactaataaagtcttgtccatt 9104606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 282
Target Start/End: Original strand, 9488909 - 9489045
Alignment:
Q  146 tcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattcttc 245  Q
    |||||||||||||||||||||||||| ||||| || |||   |||||| | ||  ||||||| ||||  || || ||||| || |||||  ||||  |||    
T  9488909 tcaagagaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacgttaacatggtgaatcgttc 9489008  T
Q  246 caatggttgcaacttcattgatgaagtcttgtccatt 282  Q
    |||| || ||||||||||||||||| || ||||||||    
T  9489009 caatcgtagcaacttcattgatgaattcctgtccatt 9489045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 9233735 - 9233674
Alignment:
Q  221 accacattcacatgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccatt 282  Q
    |||||||| |||||| | |||||||||||||| |||||||| ||||| || |||||||||||    
T  9233735 accacattaacatgatgtattcttccaatggtcgcaacttcgttgataaaatcttgtccatt 9233674  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 8873810 - 8873703
Alignment:
Q  155 ccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattcttccaatggttg 254  Q
    ||||||||||| ||||| ||||| |||||  | |||| ||  ||||  ||||||||||  | |||||||||||||| |||| | ||||| ||||||||||    
T  8873810 ccattaggcataaactcataaacaagagcacgttttgatccctcggtgcaaaatccaattaattgcaccacattcaaatgatgtattctcccaatggttg 8873711  T
Q  255 caacttca 262  Q
    | ||||||    
T  8873710 ctacttca 8873703  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 8932458 - 8932596
Alignment:
Q  144 tatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattct 243  Q
    |||||||||| ||||| |||||||| || ||||| |||||  | |||| | | ||  ||||||||||||| ||| ||||||||||    ||| | ||| |    
T  8932458 tatcaagagagccattgggcatgaaatcataaacaagagcacgttttgatttctcaacacaaaatccaacaagtcgcaccacattggtgtgatgtatttt 8932557  T
Q  244 tccaatggttgcaacttcattgatgaagtcttgtccatt 282  Q
    ||| || |||||||||||| | ||||| |||||||||||    
T  8932558 tcctatagttgcaacttcactaatgaaatcttgtccatt 8932596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 8956439 - 8956517
Alignment:
Q  203 caaaatccaaccagttgcaccacattcacatgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccat 281  Q
    ||||||||||| ||| ||||||||||    ||| | ||| |||| ||||||||||||||||| ||||| ||||||||||    
T  8956439 caaaatccaacaagtcgcaccacattggtgtgatgtatttttcctatggttgcaacttcattaatgaaatcttgtccat 8956517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 282
Target Start/End: Original strand, 9320257 - 9320397
Alignment:
Q  142 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 241  Q
    |||||||||||| ||||| | |||||| || ||||| |||||  |||||| || |||  ||||||| ||||  ||| | ||||||||    ||| | |||    
T  9320257 tttatcaagagagccattggacatgaattcataaacaagagcacgctttgatccttcaacacaaaacccaataagtcgaaccacattggtgtgatgtatt 9320356  T
Q  242 cttccaatggttgcaacttcattgatgaagtcttgtccatt 282  Q
    ||||| |||||||| |||||| | ||||| |||||||||||    
T  9320357 cttcctatggttgcgacttcactaatgaaatcttgtccatt 9320397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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