View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15544_low_2 (Length: 568)

Name: NF15544_low_2
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15544_low_2
NF15544_low_2
[»] chr8 (34 HSPs)
chr8 (9-76)||(26042116-26042183)
chr8 (9-74)||(32393858-32393923)
chr8 (9-76)||(1645965-1646032)
chr8 (9-76)||(32064743-32064810)
chr8 (9-74)||(34665382-34665447)
chr8 (9-74)||(35353041-35353106)
chr8 (9-73)||(14128865-14128929)
chr8 (9-76)||(17841850-17841917)
chr8 (9-76)||(37986055-37986122)
chr8 (9-76)||(40780129-40780196)
chr8 (9-76)||(42755042-42755109)
chr8 (10-76)||(15187558-15187624)
chr8 (9-78)||(6108233-6108302)
chr8 (9-74)||(20091801-20091866)
chr8 (9-74)||(24211553-24211618)
chr8 (9-71)||(8453837-8453899)
chr8 (9-74)||(37132658-37132723)
chr8 (9-66)||(38016979-38017036)
chr8 (9-76)||(31347782-31347849)
chr8 (9-76)||(39772801-39772868)
chr8 (9-75)||(41819778-41819844)
chr8 (9-76)||(7017865-7017932)
chr8 (9-73)||(27782117-27782181)
chr8 (9-74)||(30835047-30835111)
chr8 (9-70)||(32064952-32065012)
chr8 (17-81)||(24844866-24844930)
chr8 (9-69)||(25581239-25581299)
chr8 (9-64)||(7021988-7022043)
chr8 (11-62)||(30834862-30834913)
chr8 (20-74)||(27835464-27835518)
chr8 (9-70)||(3890413-3890474)
chr8 (9-70)||(6108032-6108092)
chr8 (9-70)||(30055722-30055782)
chr8 (9-70)||(37132479-37132540)
[»] chr7 (19 HSPs)
chr7 (9-74)||(3961979-3962044)
chr7 (9-77)||(15329270-15329338)
chr7 (9-74)||(48880927-48880992)
chr7 (11-74)||(24394972-24395035)
chr7 (9-76)||(45637710-45637777)
chr7 (9-75)||(15577850-15577916)
chr7 (9-75)||(35444557-35444623)
chr7 (9-74)||(4974735-4974800)
chr7 (9-74)||(34482835-34482900)
chr7 (9-74)||(42611811-42611876)
chr7 (9-76)||(37477080-37477147)
chr7 (9-74)||(25167850-25167915)
chr7 (9-75)||(18036977-18037043)
chr7 (9-74)||(20010098-20010162)
chr7 (10-71)||(36790467-36790528)
chr7 (9-70)||(29737143-29737204)
chr7 (9-74)||(15238382-15238447)
chr7 (9-76)||(42696081-42696148)
chr7 (9-46)||(30848597-30848634)
[»] chr6 (19 HSPs)
chr6 (9-74)||(17705465-17705530)
chr6 (9-77)||(23291084-23291152)
chr6 (9-76)||(6127273-6127340)
chr6 (9-75)||(33695327-33695393)
chr6 (9-75)||(33696695-33696761)
chr6 (9-74)||(6031741-6031806)
chr6 (9-74)||(17176021-17176086)
chr6 (9-76)||(18365573-18365640)
chr6 (9-76)||(18370837-18370904)
chr6 (9-76)||(28675146-28675213)
chr6 (10-75)||(18889698-18889762)
chr6 (9-74)||(25986930-25986995)
chr6 (9-71)||(8515725-8515787)
chr6 (10-70)||(29693652-29693712)
chr6 (9-76)||(2309423-2309490)
chr6 (9-68)||(11548588-11548647)
chr6 (9-63)||(32702216-32702270)
chr6 (9-70)||(34238886-34238946)
chr6 (10-70)||(32702412-32702471)
[»] chr5 (23 HSPs)
chr5 (9-81)||(2477629-2477701)
chr5 (9-74)||(11361131-11361196)
chr5 (9-76)||(4892200-4892267)
chr5 (9-79)||(25398233-25398303)
chr5 (9-74)||(37321793-37321859)
chr5 (9-74)||(33584329-33584394)
chr5 (9-76)||(6043511-6043578)
chr5 (11-75)||(3362777-3362841)
chr5 (11-75)||(38899728-38899792)
chr5 (9-76)||(8145373-8145440)
chr5 (9-76)||(14138666-14138733)
chr5 (9-74)||(22913054-22913119)
chr5 (11-74)||(12850801-12850864)
chr5 (9-74)||(3522006-3522071)
chr5 (9-74)||(4434007-4434072)
chr5 (9-74)||(12614733-12614798)
chr5 (20-70)||(27481830-27481880)
chr5 (9-74)||(17545685-17545750)
chr5 (37-75)||(13664641-13664679)
chr5 (11-70)||(3362987-3363045)
chr5 (9-70)||(3521806-3521866)
chr5 (9-70)||(6043311-6043371)
chr5 (9-62)||(10458409-10458462)
[»] chr4 (33 HSPs)
chr4 (9-81)||(50156578-50156650)
chr4 (9-73)||(7745112-7745176)
chr4 (9-76)||(10442789-10442856)
chr4 (9-83)||(24128230-24128304)
chr4 (9-75)||(31078819-31078885)
chr4 (9-83)||(49387888-49387962)
chr4 (9-74)||(22199261-22199326)
chr4 (9-76)||(21802322-21802389)
chr4 (9-76)||(23964465-23964532)
chr4 (11-74)||(36072947-36073010)
chr4 (9-76)||(47290064-47290131)
chr4 (9-75)||(33530688-33530754)
chr4 (9-74)||(2624837-2624902)
chr4 (11-75)||(4751445-4751509)
chr4 (9-76)||(24392665-24392732)
chr4 (9-76)||(36073348-36073415)
chr4 (9-76)||(44893424-44893491)
chr4 (9-75)||(44893213-44893280)
chr4 (9-75)||(53123029-53123096)
chr4 (9-83)||(46441835-46441909)
chr4 (10-70)||(17655637-17655697)
chr4 (9-68)||(42671675-42671734)
chr4 (20-75)||(37934952-37935007)
chr4 (9-62)||(37219837-37219890)
chr4 (10-70)||(24128446-24128505)
chr4 (9-57)||(36073743-36073791)
chr4 (9-46)||(9088898-9088935)
chr4 (9-70)||(11314050-11314111)
chr4 (9-70)||(25063373-25063434)
chr4 (9-62)||(42671874-42671927)
chr4 (9-70)||(44893012-44893072)
chr4 (9-70)||(44893632-44893692)
chr4 (10-70)||(36073260-36073320)
[»] chr3 (35 HSPs)
chr3 (9-76)||(2754715-2754782)
chr3 (9-76)||(3574527-3574594)
chr3 (10-76)||(11347266-11347332)
chr3 (9-74)||(6041884-6041949)
chr3 (9-74)||(19650900-19650965)
chr3 (9-74)||(37217053-37217118)
chr3 (9-76)||(37522051-37522118)
chr3 (9-75)||(42297352-42297419)
chr3 (9-75)||(22426344-22426410)
chr3 (9-74)||(3456064-3456129)
chr3 (9-74)||(48160905-48160970)
chr3 (9-76)||(33839529-33839596)
chr3 (9-75)||(36865027-36865093)
chr3 (9-76)||(3137414-3137481)
chr3 (9-76)||(33113791-33113858)
chr3 (9-74)||(8320584-8320649)
chr3 (9-74)||(30385011-30385076)
chr3 (9-74)||(33145713-33145777)
chr3 (9-76)||(34482910-34482977)
chr3 (13-63)||(42921154-42921204)
chr3 (9-73)||(9797029-9797093)
chr3 (36-76)||(24343545-24343585)
chr3 (20-74)||(41224233-41224287)
chr3 (20-70)||(42921342-42921392)
chr3 (9-70)||(40328037-40328098)
chr3 (131-183)||(33590378-33590430)
chr3 (131-183)||(33597550-33597602)
chr3 (9-65)||(33839741-33839797)
chr3 (37-71)||(40327878-40327912)
chr3 (9-74)||(8362045-8362110)
chr3 (9-70)||(36864831-36864892)
chr3 (9-70)||(37522259-37522319)
chr3 (43-76)||(47402630-47402663)
chr3 (11-75)||(26612784-26612848)
chr3 (10-62)||(47738117-47738169)
[»] chr2 (19 HSPs)
chr2 (9-75)||(35160756-35160822)
chr2 (9-73)||(10661888-10661952)
chr2 (9-74)||(9723405-9723470)
chr2 (9-76)||(9293576-9293643)
chr2 (9-76)||(23268062-23268129)
chr2 (9-75)||(7475508-7475574)
chr2 (9-74)||(21936081-21936146)
chr2 (9-74)||(33380207-33380272)
chr2 (10-76)||(13354844-13354910)
chr2 (9-76)||(27847630-27847697)
chr2 (9-76)||(31174834-31174901)
chr2 (9-76)||(43330910-43330977)
chr2 (9-75)||(14941366-14941432)
chr2 (9-72)||(21393688-21393751)
chr2 (9-46)||(3989104-3989141)
chr2 (9-62)||(9723612-9723665)
chr2 (9-70)||(22592918-22592979)
chr2 (9-70)||(10662094-10662154)
chr2 (9-70)||(23267861-23267921)
[»] scaffold0178 (1 HSPs)
scaffold0178 (9-74)||(11621-11686)
[»] chr1 (21 HSPs)
chr1 (9-77)||(25463673-25463741)
chr1 (9-76)||(18404440-18404507)
chr1 (9-74)||(40214988-40215053)
chr1 (9-81)||(16045798-16045870)
chr1 (9-76)||(3559615-3559682)
chr1 (9-75)||(41876442-41876508)
chr1 (9-74)||(6883487-6883552)
chr1 (9-74)||(9910293-9910358)
chr1 (9-74)||(44094698-44094763)
chr1 (9-76)||(19015402-19015469)
chr1 (11-74)||(32000269-32000332)
chr1 (9-74)||(36966708-36966773)
chr1 (9-74)||(37821834-37821899)
chr1 (9-76)||(27523255-27523324)
chr1 (9-76)||(25973412-25973478)
chr1 (9-76)||(40273700-40273767)
chr1 (37-75)||(34519757-34519795)
chr1 (37-75)||(51620979-51621017)
chr1 (12-70)||(52064376-52064434)
chr1 (9-70)||(25973613-25973673)
chr1 (9-70)||(37821633-37821693)
[»] scaffold0204 (1 HSPs)
scaffold0204 (9-76)||(4394-4461)
[»] scaffold0471 (2 HSPs)
scaffold0471 (9-83)||(12833-12907)
scaffold0471 (10-70)||(13049-13108)
[»] scaffold0665 (1 HSPs)
scaffold0665 (9-73)||(3069-3133)
[»] scaffold0096 (1 HSPs)
scaffold0096 (9-76)||(41009-41076)
[»] scaffold0085 (1 HSPs)
scaffold0085 (9-74)||(47850-47915)
[»] scaffold0228 (3 HSPs)
scaffold0228 (9-63)||(8413-8467)
scaffold0228 (9-63)||(15995-16049)
scaffold0228 (9-63)||(25947-26001)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 26042116 - 26042183
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26042116 gattattctgtcatgtcattcttgaaattttcttgataaaatctttcttaatatatagcattgctctt 26042183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 32393923 - 32393858
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32393923 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 32393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 1645965 - 1646032
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1645965 gattattctgccatgtctttcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 1646032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 32064810 - 32064743
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  32064810 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 32064743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 34665447 - 34665382
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  34665447 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 34665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 35353106 - 35353041
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  35353106 gattattctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 35353041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 14128929 - 14128865
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgct 73  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  14128929 gattattctgccatgtcattcttaaaattttattgataaaatctttcttgatatatagcattgct 14128865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 17841850 - 17841917
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  17841850 gattattctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 17841917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 37986055 - 37986122
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||    
T  37986055 gattattctgccatgtcattcttaaaatttttttgataaaatctttcttgatatatagcattactctt 37986122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 40780129 - 40780196
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  40780129 gattattctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 40780196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 42755042 - 42755109
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  42755042 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatatcattgctctt 42755109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 15187624 - 15187558
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  15187624 attattctgccatatcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 15187558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 6108233 - 6108302
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttca 78  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||    
T  6108233 gattattctgccatgtcattcttaaaattttcttaaaaaaatctttcttgatatataacattgctcttca 6108302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 20091801 - 20091866
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  20091801 gattattctgccatgtcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 20091866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 24211553 - 24211618
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  24211553 gattattctgccatgccattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 24211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 8453899 - 8453837
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattg 71  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  8453899 gattattttgtcatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattg 8453837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 37132658 - 37132723
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||| || ||||||||||||||||    
T  37132658 gattattctgccatgtcattcttaaatttttcttgataaaatattttttgatatatagcattgctc 37132723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 38017036 - 38016979
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatag 66  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  38017036 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatag 38016979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 31347782 - 31347849
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| || ||||||||| ||||| |||||| ||||||||||||||||||    
T  31347782 gattattctgccatgtcattcttgaatttttcttgagaaaatatttcttgatatatagcattgctctt 31347849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 39772801 - 39772868
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||| |||||||||| |||||| ||||||| ||||||||||    
T  39772801 gattattctgccatgtcattcttgaaatttttttgataaaatatttcttgatatataacattgctctt 39772868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 41819778 - 41819844
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| ||| ||||||||||||  |||||||||||||||||||| ||||||| |||||||||    
T  41819778 gattattctgccatatcattcttaaaacattcttgataaaatctttcttgatatataacattgctct 41819844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 7017865 - 7017932
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| || ||||||| | |||||||||| | ||||||||||||||||||    
T  7017865 gattattctgccatgtcattcttgaatttttcttaagaaaatctttcatgatatatagcattgctctt 7017932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 27782117 - 27782181
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgct 73  Q
    |||||||||| ||||||||| || ||  |||||||||||||| |||||| |||||||||||||||    
T  27782117 gattattctgccatgtcattattgaatctttcttgataaaatatttcttgatatatagcattgct 27782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 30835047 - 30835111
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| || |||| | ||||||||||||||| ||||||| ||||||||    
T  30835047 gattattctgccatgtcattcttgaattttt-tcgataaaatctttcttgatatataacattgctc 30835111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 32064952 - 32065012
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| |||||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  32064952 gattattgtgtcatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 32065012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 24844866 - 24844930
Alignment:
Q  17 tgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttcattt 81  Q
    ||||||||||||||| || ||||||| ||||||| |||||| |||| ||||||| ||||| ||||    
T  24844866 tgtcatgtcattcttgaatttttcttaataaaatatttcttgatatgtagcatttctctttattt 24844930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 25581239 - 25581299
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcat 69  Q
    ||||||| || |||||||||||| ||||||||||  ||||| ||||||| |||||||||||    
T  25581239 gattattttgccatgtcattcttgaaattttcttcgtaaaaactttcttgatatatagcat 25581299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 7022043 - 7021988
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatat 64  Q
    |||||||||| ||| |||||||| || ||||||||| |||||||||||| ||||||    
T  7022043 gattattctgccatatcattcttgaatttttcttgagaaaatctttcttgatatat 7021988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 30834913 - 30834862
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatat 62  Q
    ||||||||||||||||||||| ||  ||||||||||||||| ||||| ||||    
T  30834913 ttattctgtcatgtcattctttaatctttcttgataaaatcattcttgatat 30834862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 27835464 - 27835518
Alignment:
Q  20 catgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||||| || ||||||| |||| |||||| || ||||||||||||||||    
T  27835464 catgtcattcttgaatttttcttaataagatctttattgatatatagcattgctc 27835518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 3890474 - 3890413
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||||||| ||| |||||||| ||  ||||||||||||||| ||||| |||| |||||||    
T  3890474 gattattctgccatatcattcttgaatctttcttgataaaatcattcttgatatctagcatt 3890413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 6108092 - 6108032
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||||| || ||||||| |||||||| ||||| |||| |||||||    
T  6108092 gattattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcatt 6108032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 30055722 - 30055782
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||||| ||  |||||| |||||||| |||||||||| |||||||    
T  30055722 gattattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttaatatctagcatt 30055782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 37132540 - 37132479
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||| | ||  ||||||||||||||| ||||| |||| |||||||    
T  37132540 gattattgtgtcatgtcattcatgaatctttcttgataaaatcattcttgatatctagcatt 37132479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 3962044 - 3961979
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3962044 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 3961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 15329338 - 15329270
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttc 77  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  15329338 gattattctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttc 15329270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 48880927 - 48880992
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  48880927 gattattctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 48880992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 24395035 - 24394972
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24395035 ttattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 24394972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 45637777 - 45637710
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  45637777 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 45637710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 15577850 - 15577916
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  15577850 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 15577916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 35444623 - 35444557
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  35444623 gattattctgccatgtcattcttgaaattttcttgaaaaaatctttcttaatatatagcattgctct 35444557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 4974735 - 4974800
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  4974735 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 4974800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 34482900 - 34482835
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  34482900 gattattctgccatgtcattcttaaaattttcttaataaaatctttcttgatatatagcattgctc 34482835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 42611876 - 42611811
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  42611876 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 42611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 37477080 - 37477147
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  37477080 gattattctgccatgtcattcttaaatttttcttgagaaaatctttcttgatatatagcattgctctt 37477147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 25167850 - 25167915
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  25167850 gattattctgccatgtcattcttaaaattttcttaaaaaaatctttcttgatatatagcattgctc 25167915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 18037043 - 18036977
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||| |||||||||    
T  18037043 gattattctgccatgtcattcttaaatttttcttgaaaaaatctttcttgatatatatcattgctct 18036977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 20010098 - 20010162
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  20010098 gattattctgt-atgtcattcttgaaatttttttgataaaatctttcttgatatatagcattgctc 20010162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 36790467 - 36790528
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattg 71  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  36790467 attattctgccatgtcattcttaaatttttcttgataaaaactttcttgatatatagcattg 36790528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 29737204 - 29737143
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||||||  ||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  29737204 gattattctaccatgtcattcttaaaattttcttaaaaaaatctttcttgatatatagcatt 29737143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 15238447 - 15238382
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| || ||||||||| ||| | |||||| ||||||||||||||||    
T  15238447 gattattctgccatgtcattcttgaatttttcttgagaaattttttcttgatatatagcattgctc 15238382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 42696148 - 42696081
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    ||||||||||  |||||||||||||||  || || |||||||||||||| ||||||| ||||||||||    
T  42696148 gattattctgctatgtcattcttaaaaaatttttaataaaatctttcttgatatataacattgctctt 42696081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 30848634 - 30848597
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgata 46  Q
    |||||||||| |||||||||||||||||||||||||||    
T  30848634 gattattctgccatgtcattcttaaaattttcttgata 30848597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 17705465 - 17705530
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17705465 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 17705530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 23291084 - 23291152
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttc 77  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23291084 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcttc 23291152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 6127340 - 6127273
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6127340 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 6127273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 33695327 - 33695393
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  33695327 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 33695393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 33696761 - 33696695
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  33696761 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 33696695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 6031741 - 6031806
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  6031741 gattattctgtcatgtcattcttaaaattttattgatgaaatctttcttgatatatagcattgctc 6031806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 17176021 - 17176086
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  17176021 gattattctgtcatgtcattcttgaaattttattgataaaatctttcttgatatatagcattgctc 17176086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 18365573 - 18365640
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  18365573 gattattctgccatgtcattcttgaaatttttttgataaaatctttcttgatatatagcattgctctt 18365640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 18370837 - 18370904
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  18370837 gattattctgccatgtcattcttgaaatttttttgataaaatctttcttgatatatagcattgctctt 18370904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 28675213 - 28675146
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  28675213 gattattccgacatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 28675146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 18889698 - 18889762
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  18889698 attattctgccatgtcattcttgaaattttcttgat-aaatctttcttgatatatagcattgctct 18889762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 25986995 - 25986930
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||| || |||||||||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  25986995 gattattttgccatgtcattcttgaaattttcttaataaaatctttcttgatatatagcattgctc 25986930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 8515725 - 8515787
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattg 71  Q
    |||||||||| |||||||||||||||  | ||||||||||||||||||| |||||||||||||    
T  8515725 gattattctgccatgtcattcttaaatctgtcttgataaaatctttcttgatatatagcattg 8515787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 29693652 - 29693712
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||||| |||||||||||||||  ||||||||||||||| ||||| |||| |||||||    
T  29693652 attattctgccatgtcattcttaaatctttcttgataaaatcattcttgatatctagcatt 29693712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 2309423 - 2309490
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||| |||||||||||   | ||||||||||||||||| ||||||| ||||||||||    
T  2309423 gattattctgccatgccattcttaaaaaaattttgataaaatctttcttgatatataacattgctctt 2309490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 11548588 - 11548647
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagca 68  Q
    |||||||||| |||||||||||| || ||||||||| ||||| |||||| ||||||||||    
T  11548588 gattattctgccatgtcattcttgaatttttcttgagaaaatttttcttgatatatagca 11548647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 32702270 - 32702216
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatata 63  Q
    |||||||||| ||| |||||||| |||||||| ||| |||||||||||| |||||    
T  32702270 gattattctgccatatcattcttgaaattttcatgaaaaaatctttcttgatata 32702216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 34238946 - 34238886
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||||| || | |||||||||||||| ||||| |||| |||||||    
T  34238946 gattattgtgtcatgtcattcttgaa-tcttcttgataaaatcattcttgatatctagcatt 34238886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 32702412 - 32702471
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||| ||||||||||||||| || ||||||| |||||||| ||||| |||| |||||||    
T  32702412 attattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcatt 32702471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 2477701 - 2477629
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttcattt 81  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  2477701 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctttattt 2477629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 11361131 - 11361196
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11361131 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 11361196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 4892267 - 4892200
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  4892267 gattattctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctctt 4892200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 25398303 - 25398233
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttcat 79  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||    
T  25398303 gattattctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctcgtcat 25398233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 37321793 - 37321859
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttctta-atatatagcattgctc 74  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37321793 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttagatatatagcattgctc 37321859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 33584329 - 33584394
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  33584329 gattattctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 33584394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 6043511 - 6043578
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||  |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  6043511 gattattcttccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 6043578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 3362841 - 3362777
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  3362841 ttattctgccatgtcattcttggaattttcttgataaaatctttcttgatatatagcattgctct 3362777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 38899728 - 38899792
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  38899728 ttattctgccatgtcattcttggaattttcttgataaaatctttcttgatatatagcattgctct 38899792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 8145440 - 8145373
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||    
T  8145440 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatataacattcctctt 8145373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 14138733 - 14138666
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  14138733 gattattctgccatgtaattcttgaaattttcttgataaaatctttcttgatatataacattgctctt 14138666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 22913054 - 22913119
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| || ||||||||| |||||||||||| ||||||||||||||||    
T  22913054 gattattctgccatgtcattcttgaatttttcttgaaaaaatctttcttgatatatagcattgctc 22913119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 12850864 - 12850801
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||| ||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||    
T  12850864 ttattctgccatgtcatttttggaattttcttgataaaatctttcttgatatatagcattgctc 12850801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 3522006 - 3522071
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||||||||| || |||||||||||| |||||||||||| ||||||| ||||||||    
T  3522006 gattattctgccatgtcatttttgaaattttcttgaaaaaatctttcttgatatataacattgctc 3522071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 4434007 - 4434072
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||| |||||||| |||||||||| | |||||||||||| ||||||||||||||||    
T  4434007 gattattctgccatatcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctc 4434072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 12614733 - 12614798
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||| ||||||||||||||| ||  |||||||||||||| |||||| ||||||||||||||||    
T  12614733 gattattatgtcatgtcattcttgaatctttcttgataaaatatttcttgatatatagcattgctc 12614798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 27481880 - 27481830
Alignment:
Q  20 catgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  27481880 catgtcattcttgaatttttcttgataaaatctttcttaatacatagcatt 27481830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 17545685 - 17545750
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| || ||||||||| ||| | |||||| ||||||||||||||||    
T  17545685 gattattctgccatgtcattcttgaatttttcttgagaaattttttcttgatatatagcattgctc 17545750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 13664679 - 13664641
Alignment:
Q  37 tttcttgataaaatctttcttaatatatagcattgctct 75  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  13664679 tttcttgataaaatctttcttaatatataacattgctct 13664641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 3362987 - 3363045
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||| |||||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  3362987 ttattgtgtcatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 3363045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 3521866 - 3521806
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| || ||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  3521866 gattattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 3521806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 6043371 - 6043311
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| || ||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  6043371 gattattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 6043311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 10458462 - 10458409
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatat 62  Q
    ||||||| || |||||||||||| || ||||||||||||||| |||||| ||||    
T  10458462 gattattttgccatgtcattcttgaatttttcttgataaaatttttcttgatat 10458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 50156578 - 50156650
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttcattt 81  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  50156578 gattattctgccatgtcattcttaaaattttcttgaaaaaatctttcttaatatatagcattgctcttgattt 50156650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 7745112 - 7745176
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgct 73  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7745112 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgct 7745176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 10442789 - 10442856
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  10442789 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 10442856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 24128304 - 24128230
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttcatttaa 83  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  24128304 gattattctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctttatttaa 24128230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 31078819 - 31078885
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  31078819 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 31078885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 49387888 - 49387962
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttcatttaa 83  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  49387888 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatcttttaa 49387962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 22199326 - 22199261
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  22199326 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 22199261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 21802322 - 21802389
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  21802322 gattattctgccatgtcattcttgaaattttcttgataaaatatttcttgatatatagcattgctctt 21802389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 23964465 - 23964532
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  23964465 gattattctgccatgtcattcttaaaatttttttgataaaatctttcttgatatataacattgctctt 23964532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 36073010 - 36072947
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  36073010 ttattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 36072947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 47290131 - 47290064
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  47290131 gattattctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 47290064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 33530688 - 33530754
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||| || |||||||||||||||||||||| |||||||||||||||||    
T  33530688 gattattctgccatgtcattcttgaatttttcttgataaaatctttcttgatatatagcattgctct 33530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 2624902 - 2624837
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  2624902 gattattctgccatttcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 2624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 4751509 - 4751445
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  4751509 ttattctgccatgtcattcttggaattttcttgataaaatctttcttgatatatagcattgctct 4751445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 24392732 - 24392665
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| || ||||||||| |||||||||||| ||||||||||||||||||    
T  24392732 gattattctgccatgtcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctctt 24392665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 36073415 - 36073348
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||    
T  36073415 gattattctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattcctctt 36073348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 44893491 - 44893424
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||    
T  44893491 gattattctgccatgtcattcttgaaatttttttgaaaaaatctttcttgatatatagcattgctctt 44893424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 44893213 - 44893280
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttctt-gataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||| ||||||| || || ||||||||||||||||||||||||||||||    
T  44893213 gattattctgccatgtcattcttgaaattttttttgaaaaaatctttcttaatatatagcattgctct 44893280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 53123096 - 53123029
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttctt-gataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||| |||||||||| || |||||||||||| |||||||||||||||||    
T  53123096 gattattctgccatgtcattcttgaaattttctttgaaaaaatctttcttgatatatagcattgctct 53123029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 46441909 - 46441835
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttcatttaa 83  Q
    ||||||| || |||||||||||| |||||||||| | |||||||||||| |||||||||||||||| | ||||||    
T  46441909 gattattttgccatgtcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctcataatttaa 46441835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 17655637 - 17655697
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||| ||||||||||||||||||  ||||||||||||||| |||||||||| |||||||    
T  17655637 attattatgtcatgtcattcttaaatctttcttgataaaatcattcttaatatctagcatt 17655697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 42671734 - 42671675
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagca 68  Q
    |||||||||| ||||||||||||||| |||| |||||||||||||| || ||||||||||    
T  42671734 gattattctgccatgtcattcttaaattttttttgataaaatctttattgatatatagca 42671675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 37934952 - 37935007
Alignment:
Q  20 catgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||||| | ||||| |||||||||||||| || |||||||||||||||||    
T  37934952 catgtcattcttgacatttttttgataaaatcttttttgatatatagcattgctct 37935007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 37219837 - 37219890
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatat 62  Q
    |||||||||| |||||||||||||||  ||||||||||||||| ||||| ||||    
T  37219837 gattattctgccatgtcattcttaaatctttcttgataaaatcattcttgatat 37219890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 24128446 - 24128505
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||| |||||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  24128446 attattgtgtcatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 24128505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 36073743 - 36073791
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttctt 57  Q
    ||||||| ||||||||||||||||||  |||||| ||||||||||||||    
T  36073743 gattattttgtcatgtcattcttaaatctttcttcataaaatctttctt 36073791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 9088935 - 9088898
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgata 46  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  9088935 gattattctgccatgtcattcttgaaattttcttgata 9088898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 11314111 - 11314050
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| |||||||||||||||  |  ||||||||||||||| ||||| |||| |||||||    
T  11314111 gattattgtgtcatgtcattcttgcatctttcttgataaaatcattcttgatatctagcatt 11314050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 25063434 - 25063373
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||||||  |||||||||||| ||  ||||||||||||||| ||||| |||| |||||||    
T  25063434 gattattctaccatgtcattcttgaatctttcttgataaaatcattcttgatatctagcatt 25063373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 42671874 - 42671927
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatat 62  Q
    ||||||| ||||||||||||||| ||  ||||||||||||||| ||||| ||||    
T  42671874 gattattatgtcatgtcattcttgaatctttcttgataaaatcattcttgatat 42671927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 44893072 - 44893012
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| || ||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  44893072 gattattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 44893012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 44893632 - 44893692
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| || ||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  44893632 gattattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 44893692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 36073320 - 36073260
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||||| ||| |||||||||||  ||||||||||||||| || ||| ||| |||||||    
T  36073320 attattctggcatatcattcttaaatctttcttgataaaatcatttttagtatctagcatt 36073260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 2754782 - 2754715
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2754782 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 2754715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 3574527 - 3574594
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3574527 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 3574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 11347332 - 11347266
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11347332 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 11347266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 6041949 - 6041884
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  6041949 gattattctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 6041884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 19650900 - 19650965
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19650900 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttaatatataacattgctc 19650965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 37217053 - 37217118
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37217053 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 37217118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 37522118 - 37522051
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||    
T  37522118 gattattctgtcatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagtattgctctt 37522051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 42297419 - 42297352
Alignment:
Q  9 gattattct-gtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42297419 gattattctagtcatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctct 42297352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 22426344 - 22426410
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  22426344 gattattctgccatgtcatttttaaaattttcttgataaaatctttcttaatatataacattgctct 22426410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 3456129 - 3456064
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3456129 gattattctgccatatcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 3456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 48160970 - 48160905
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48160970 gattattctgccatatcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 48160905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 33839596 - 33839529
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||    
T  33839596 gattattctgtcatgttattcttaaattttttttgataaaatctttcttaatatataacattgctctt 33839529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 36865027 - 36865093
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  36865027 gattattctaccatgtcattcttaaaattttcttaataaaatcttccttaatatatagcattgctct 36865093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 3137414 - 3137481
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    ||||||| || |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  3137414 gattattttgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 3137481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 33113858 - 33113791
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| ||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||    
T  33113858 gattattctgccatgtaattcttgaaattttcttaataaaatctttcttgatatatagcattgctctt 33113791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 8320584 - 8320649
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||| || ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  8320584 gattattttgccatatcattcttaaaattttcttgataaaatctttcttgatatataacattgctc 8320649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 30385076 - 30385011
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||    
T  30385076 gattattctgccatgtcatttttgaaattttcttgataaaatctttcttgataaatagcattgctc 30385011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 33145777 - 33145713
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  33145777 gattattctgccatgtcattcttaaaatttt-ttaataaaatctttcttgatatatagcattgctc 33145713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 34482910 - 34482977
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||  ||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  34482910 gattattctaccatatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 34482977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 42921204 - 42921154
Alignment:
Q  13 attctgtcatgtcattcttaaaattttcttgataaaatctttcttaatata 63  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  42921204 attcggtcatgtcattcttaaaattttcttgataaaatctttcttgatata 42921154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 9797029 - 9797093
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgct 73  Q
    |||||||||| |||||||||||| || ||||||||| |||||||||||| ||||||| |||||||    
T  9797029 gattattctgccatgtcattcttgaatttttcttgagaaaatctttcttgatatataacattgct 9797093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 24343585 - 24343545
Alignment:
Q  36 ttttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24343585 ttttcttgataaaatctttcttaatatatagcattgctctt 24343545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 41224287 - 41224233
Alignment:
Q  20 catgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||||| || ||||||||| ||||||||||||||||||||||| |||||    
T  41224287 catgtcattcttgaatttttcttgagaaaatctttcttaatatatagcagtgctc 41224233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 42921342 - 42921392
Alignment:
Q  20 catgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||||||||||||  ||||||||||||||| |||||||||| |||||||    
T  42921342 catgtcattcttaaatatttcttgataaaatcattcttaatatctagcatt 42921392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 40328037 - 40328098
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||||| ||  ||||||||||||||| ||||| |||| |||||||    
T  40328037 gattattgtgtcatgtcattcttgaatctttcttgataaaatcattcttgatatctagcatt 40328098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 33590378 - 33590430
Alignment:
Q  131 tatgttaatgtgaatttattaggcatatgtcaactatataaatgactttctat 183  Q
    |||||||||||| |||||||||||| |||||||| |||| |||| ||||||||    
T  33590378 tatgttaatgtgtatttattaggcaaatgtcaacgatatgaatgcctttctat 33590430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 33597550 - 33597602
Alignment:
Q  131 tatgttaatgtgaatttattaggcatatgtcaactatataaatgactttctat 183  Q
    |||||||||||| |||||||||||| |||||||| |||| |||| ||||||||    
T  33597550 tatgttaatgtgtatttattaggcaaatgtcaacgatatgaatgcctttctat 33597602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 33839741 - 33839797
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatata 65  Q
    ||||||| ||||||||||||||| ||  ||||||||||||||| ||||| |||||||    
T  33839741 gattattgtgtcatgtcattcttgaatctttcttgataaaatcattcttgatatata 33839797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 40327912 - 40327878
Alignment:
Q  37 tttcttgataaaatctttcttaatatatagcattg 71  Q
    ||||||||||||||||||||| |||||||||||||    
T  40327912 tttcttgataaaatctttcttgatatatagcattg 40327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 8362045 - 8362110
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| || ||||||||| |   | |||||| ||||||||||||||||    
T  8362045 gattattctgccatgtcattcttgaatttttcttgaaattttttttcttgatatatagcattgctc 8362110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 36864892 - 36864831
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||||| ||  ||| ||||||||||| ||||| |||| |||||||    
T  36864892 gattattgtgtcatgtcattcttgaatcttttttgataaaatcattcttgatatctagcatt 36864831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 37522259 - 37522319
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| || ||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  37522259 gattattatgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 37522319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 47402630 - 47402663
Alignment:
Q  43 gataaaatctttcttaatatatagcattgctctt 76  Q
    ||||||||||||||| ||||||||||||||||||    
T  47402630 gataaaatctttcttgatatatagcattgctctt 47402663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 26612848 - 26612784
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||| |||||||||||| || |||| || ||||||||||| || |||||||  ||||||||    
T  26612848 ttattctgccatgtcattcttgaatttttttttataaaatcttttttgatatataatattgctct 26612784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 47738169 - 47738117
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatat 62  Q
    ||||||||| ||| |||||||| ||  ||||||||||||||||||||| ||||    
T  47738169 attattctgccatatcattcttgaatatttcttgataaaatctttcttgatat 47738117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 35160822 - 35160756
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35160822 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctct 35160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 10661952 - 10661888
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgct 73  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10661952 gattattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgct 10661888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 9723470 - 9723405
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  9723470 gattattctgtcatgtcattcttaaatctttcttaataaaatctttcttaatatatagcattgctc 9723405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 9293576 - 9293643
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  9293576 gattattctgccatgtcattcttgaaaatttcttgataaaatctttcttgatatatagcattgctctt 9293643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 23268062 - 23268129
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  23268062 gattattctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 23268129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 7475508 - 7475574
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  7475508 gattattctatcatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctct 7475574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 21936146 - 21936081
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  21936146 gattattctgccatatcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 21936081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 33380272 - 33380207
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  33380272 gattattcagccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 33380207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 13354910 - 13354844
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  13354910 attattctgccatatcattcttgaaattttcttgataaaatctttcttgatatataacattgctctt 13354844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 27847697 - 27847630
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    ||||||||||||||||||||||| ||  |||||| |||||||||||||| ||||| ||||||||||||    
T  27847697 gattattctgtcatgtcattcttgaatctttcttaataaaatctttctttatatacagcattgctctt 27847630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 31174834 - 31174901
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||| ||||| ||||    
T  31174834 gattattctgccatgtcattcttgaaattttcttaataaaatctttcttgatatataacattgttctt 31174901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 43330977 - 43330910
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| || |||| |||| |||||||||||| ||||||||||||||||||    
T  43330977 gattattctgccatgtcattcttgaattttttttgagaaaatctttcttgatatatagcattgctctt 43330910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 14941366 - 14941432
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||| ||  |||||| |||||||||||||| |||||||||||||||||    
T  14941366 gattattctgccatgtcattcttgaatctttcttaataaaatctttcttgatatatagcattgctct 14941432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 21393688 - 21393751
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgc 72  Q
    |||||||||  ||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||    
T  21393688 gattattctaccatgtcattcttaaatttttcttgagaaaatttttcttgatatatagcattgc 21393751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 3989141 - 3989104
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgata 46  Q
    |||||||||| |||||||||||||||||||||||||||    
T  3989141 gattattctgccatgtcattcttaaaattttcttgata 3989104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 9723612 - 9723665
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatat 62  Q
    ||||||||||||||||||||||||||  ||||||||| ||||| ||||| ||||    
T  9723612 gattattctgtcatgtcattcttaaatatttcttgatcaaatcattcttgatat 9723665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 22592918 - 22592979
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||||| ||  ||||||||||||||| ||||| |||| |||||||    
T  22592918 gattattgtgtcatgtcattcttgaatctttcttgataaaatcattcttgatatctagcatt 22592979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 10662094 - 10662154
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||||| || ||||||| |||||||| ||||| |||| |||||||    
T  10662094 gattattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcatt 10662154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 23267921 - 23267861
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| || ||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  23267921 gattattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 23267861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 11686 - 11621
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  11686 gattattctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 11621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 25463741 - 25463673
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttc 77  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  25463741 gattattctgccatgtcattcttaaaattttcttcataaaatctttcttgatatatagcattgctcttc 25463673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 18404507 - 18404440
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18404507 gattattctaccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 18404440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 40215053 - 40214988
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  40215053 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 40214988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 16045798 - 16045870
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttcattt 81  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  16045798 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattactctttattt 16045870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 3559682 - 3559615
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  3559682 gattattctgccatgtcattcttaaaatttttttgataaaatctttcttgatatatagcattgttctt 3559615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 41876442 - 41876508
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||    
T  41876442 gattattctgccatgtcattcttaaaatttttttgaaaaaatctttcttgatatatagcattgctct 41876508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 6883552 - 6883487
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||||||||||    
T  6883552 gattattctgccatgtcattcttgaaattttcttaaaaaaatctttcttaatatatagcattgctc 6883487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 9910293 - 9910358
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  9910293 gattattctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 9910358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 44094763 - 44094698
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  44094763 gattattctgccatgtcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 44094698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 19015469 - 19015402
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| ||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  19015469 gattattctgccatatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 19015402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 32000269 - 32000332
Alignment:
Q  11 ttattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||    
T  32000269 ttattctgtcatgtcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctc 32000332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 36966708 - 36966773
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  36966708 gattattctgccatatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 36966773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 37821834 - 37821899
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| ||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  37821834 gattattctgccatatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 37821899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 27523255 - 27523324
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaa--tatatagcattgctctt 76  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||| |  |||||||||||||||||    
T  27523255 gattattctgtcatgtcattcttaaatttttcttgataaaattgttcttgatgtatatagcattgctctt 27523324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 25973478 - 25973412
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| | |||||||||| |||||||| |||||||||||||||| ||||||| ||||||||||    
T  25973478 gattattctgcc-tgtcattcttgaaattttcatgataaaatctttcttgatatataacattgctctt 25973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 40273767 - 40273700
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    ||||||| || |||||||||||| || ||||||||| |||||||||||| |||| |||||||||||||    
T  40273767 gattattttgacatgtcattcttgaatttttcttgaaaaaatctttcttgatatctagcattgctctt 40273700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 34519795 - 34519757
Alignment:
Q  37 tttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  34519795 tttcttaataaaatctttcttgatatatagcattgctct 34519757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 51621017 - 51620979
Alignment:
Q  37 tttcttgataaaatctttcttaatatatagcattgctct 75  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  51621017 tttcttaataaaatctttcttgatatatagcattgctct 51620979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 52064434 - 52064376
Alignment:
Q  12 tattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||||||||||||||||| ||  ||||||||||||||| || || |||| |||||||    
T  52064434 tattctgtcatgtcattcttgaatctttcttgataaaatcatttttgatatctagcatt 52064376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 25973613 - 25973673
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||||| || ||||||| |||||||| ||||| |||| |||||||    
T  25973613 gattattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcatt 25973673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 37821693 - 37821633
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    ||||||| ||||||||||||||| || ||||||| |||||||| ||||| |||| |||||||    
T  37821693 gattattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcatt 37821633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 4461 - 4394
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  4461 gattattctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctctt 4394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 12907 - 12833
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctcttcatttaa 83  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  12907 gattattctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctttatttaa 12833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 13049 - 13108
Alignment:
Q  10 attattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcatt 70  Q
    |||||| |||||||||||||||||| ||||||| |||||||| ||||| |||| |||||||    
T  13049 attattgtgtcatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatt 13108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 3133 - 3069
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgct 73  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  3133 gattattctgccatgtcattcttaaaattttattgataaaatctttcttgatatatagcattgct 3069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 41076 - 41009
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctctt 76  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  41076 gattattctgccatgtcattcttgaaatttttttgataaaatctttcttgatatatagcattgctctt 41009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 47915 - 47850
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatatatagcattgctc 74  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  47915 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgataaatagcattgctc 47850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 8467 - 8413
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatata 63  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  8467 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatata 8413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 16049 - 15995
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatata 63  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  16049 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatata 15995  T

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Target: scaffold0228; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 26001 - 25947
Alignment:
Q  9 gattattctgtcatgtcattcttaaaattttcttgataaaatctttcttaatata 63  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  26001 gattattctgccatgtcattcttgaaattttcttgataaaatctttcttgatata 25947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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