View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_25 (Length: 298)
Name: NF15544_low_25
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 15541289 - 15541060
Alignment:
| Q |
16 |
acaacgcatgatatatgcaaggtccggaattcgaacccagaacatcaacnnnnnnnttactgaagttatttaaactacattaaat----attacaaatgt |
111 |
Q |
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| T |
15541289 |
acaacacatgatatatgcaaggtccggaattcaaaccccgaacaccaacaacaaaattactgaagttatttaaactactttaaattaatattacaaatgt |
15541190 |
T |
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| Q |
112 |
tttgcttacaattattt-atttaggtagctaattattattaataccacaaaaataaattattaaaataggacaaaacggaaaacacttgaacaacaatat |
210 |
Q |
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| T |
15541189 |
tttgcttacaattaattcatttaggtagctaattattattaataccacaaaaataaattattaaaataggacaaaacggaaaacacttgaacaacaatat |
15541090 |
T |
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| Q |
211 |
tttgtgtgtactaaaaataggaacatcaat |
240 |
Q |
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| T |
15541089 |
tttgtgtgtactaaaaataggaacatcaat |
15541060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 2836981 - 2836928
Alignment:
| Q |
206 |
aatattttgtgtgtactaaaaataggaacatcaatttatgcagatcaaactact |
259 |
Q |
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| T |
2836981 |
aatattctatgtgtagcaaaaataggaaaatcaatttatgcagataaaactact |
2836928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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