View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_27 (Length: 293)
Name: NF15544_low_27
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_27 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 48025163 - 48025440
Alignment:
| Q |
1 |
ttgagattgagtgtgagagttctgatcctgaagaagctaaacggattctggaggagtttttgaaggagaatgaaattgattattcatactctgttgcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48025163 |
ttgagattgagtgtgagagttctgatcctgaagaagctaaacggattctggaggagtttttgaaggagaatgaaattgattattcatactctgttgcttc |
48025262 |
T |
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| Q |
101 |
taaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctattgttttttgagttgagttgaattagtttataagttatgcttttgttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48025263 |
taaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctatcgttttttgagttgagttgaattagtttataagttatgcttttgttg |
48025362 |
T |
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| Q |
201 |
ttgataat-atatgagtgtaagattttctgtttgttgtgtgttgcaagttactgttaatctcatgttccttcctacttat |
279 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48025363 |
ttgataataatatgagtgtaagattttctgtttgt--tgtgttgcaagttactgttaatctcatgttccttcctacttat |
48025440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 48020374 - 48020615
Alignment:
| Q |
1 |
ttgagattgagtgtgagagttctgatcctgaagaagctaaacggattctggaggagtttttgaaggagaatgaaattgattattcatactctgttgcttc |
100 |
Q |
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|||||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48020374 |
ttgagattgaatgtgaaagttctgatcctgaagaagccaaacgcattcttgaggagttcttgaaggagaatggaattgattattcatactctgttgcttc |
48020473 |
T |
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| Q |
101 |
taaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctattgtttt----ttgagttgagttgaattagtttataagttat-gcttt |
195 |
Q |
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|||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||| |||| ||||||||||||||| | ||| |
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| T |
48020474 |
taaatttgcaatttttcgagctgggaaattgccatagtgagtggattttctattgtttttcaattgagttgaaatgaactagtttataagttatggtttt |
48020573 |
T |
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| Q |
196 |
tgttgttgataatatatgagtgtaagattttctgtttgttgt |
237 |
Q |
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||| ||||||||| || || ||||| |||| |||||||||| |
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| T |
48020574 |
tgtagttgataatttaagaatgtaacatttcatgtttgttgt |
48020615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 13934 - 14210
Alignment:
| Q |
1 |
ttgagattgagtgtgagagttctgatcctgaagaagctaaacggattctggaggagtttttgaaggagaatgaaattgattattcatactctgttgcttc |
100 |
Q |
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|||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13934 |
ttgagattgagtgtgaaagctctgatcctgaagaagctaaacagattctggaggagtttttgaaggagaatgaaattgattattcatactctgttgcttc |
14033 |
T |
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| Q |
101 |
taaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctattgttttttgagttgagttgaattagtttataagttatgcttttgttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14034 |
taaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctatcattttttgagttgagttgaattagtttataagttatgcttttgttg |
14133 |
T |
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| Q |
201 |
ttgataatatatgagtgtaagattttctgtttgttgtg--------tgttgcaagttactgttaatctcatgttcct |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
14134 |
ttgataatatatgagtgtaagattttctgtttgttgtgttgccatattgtgcaagttactgttaatctcatgttcct |
14210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 51934764 - 51935040
Alignment:
| Q |
1 |
ttgagattgagtgtgagagttctgatcctgaagaagctaaacggattctggaggagtttttgaaggagaatgaaattgattattcatactctgttgcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
51934764 |
ttgagattgagtgtgagagttctgatcctgaagaagctaaacggattctggaggagtttttgaaggagaatgatattgattattcatactcttttgcttc |
51934863 |
T |
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| Q |
101 |
taaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctattgttttttgagttgagttgaattagtttataagttatgcttttgttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51934864 |
taaattctcaatttttcgatctgggaaattgccatagtgtgtcaattttctatcgttttttgagttgagttgaattagtttataagttatgtttttgttg |
51934963 |
T |
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| Q |
201 |
ttgataatatatgagtgtaagattttctgtttgttgtg--------tgttgcaagttactgttaatctcatgttcct |
269 |
Q |
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|||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |
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| T |
51934964 |
ttgataatatatgagtgtaagattttatgtttgttgtgttgccatattgtgcaagttactgttaatctcatgttcct |
51935040 |
T |
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