View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15544_low_28 (Length: 289)
Name: NF15544_low_28
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 39233301 - 39233025
Alignment:
| Q |
1 |
gaaacctctcgtgacaaaccttttgttgtctaagaaatccgacaagtaattgcttctctatagatgtgacaaactcaaacctcctaactgtgatgcatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
39233301 |
gaaacctctcgtgacaaaccttttgttgtctaagaaatccaacaagtaattgcatctctataggcgtgaca--ctcaaacctcctaactgtgatgcatga |
39233204 |
T |
|
| Q |
101 |
gatgataaatctttctcatcagactcctccgatccgtataaatagtctacagccctggaatgtcaagagcggtgggcagttcttaaatttagatgatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39233203 |
gatgataaatctttctcatcagactcctccgatccgtataaatagtctacaaccctggaatgtcaagagcggtgggcagttcttaaatttagatgatgaa |
39233104 |
T |
|
| Q |
201 |
tgttgtttagttattgtttctggtgtattccttgggtttggggaggctggtttggtagcttgtactgtatttgcctttg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39233103 |
tgttgtttagttattgtttctggtgtattccttgggtttggggaggctggtttggtagcttgtactgtatttgcctttg |
39233025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University