View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_29 (Length: 282)
Name: NF15544_low_29
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 36149621 - 36149358
Alignment:
| Q |
1 |
ttgtcaattacacatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcc |
100 |
Q |
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| T |
36149621 |
ttgtcaattacacatgtgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcc |
36149522 |
T |
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| Q |
101 |
tccttcaccgccgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgca |
200 |
Q |
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| T |
36149521 |
tccttcaccgccgccaccactgcatggtgtcgaagtaattccacacacaatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgca |
36149422 |
T |
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| Q |
201 |
ctgaaaatagacgacaaagaagaacactctcctaatcaaggacaagaagtagcacacgtgaagg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149421 |
ctgaaaatagacgacaaagaagaacactctcctaatcaaggacaagaagtagcacacgtgaagg |
36149358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 36083533 - 36083446
Alignment:
| Q |
12 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaaca---acaagaagaagttcccatgatggaaaatgattctc |
96 |
Q |
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| T |
36083533 |
acatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggaaagtgattctc |
36083446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 36149799 - 36149636
Alignment:
| Q |
12 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctcctt------ |
105 |
Q |
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| T |
36149799 |
acatgtgcactcaaaatagatgagaaagaagaaga---ctctcccaagctagaaaaagaagtgcaaatgaaggaaagtgattctccgcctccttcaccac |
36149703 |
T |
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| Q |
106 |
caccgccgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaaga |
172 |
Q |
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| T |
36149702 |
caccaccgccacagctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaaaga |
36149636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 36083556 - 36083458
Alignment:
| Q |
169 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaa---cactctcctaatcaaggacaagaagtagcacacgtgaagg |
264 |
Q |
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| T |
36083556 |
aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaagg |
36083458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 36149822 - 36149759
Alignment:
| Q |
169 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcc |
232 |
Q |
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| T |
36149822 |
aagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagaaagaagaagactctcc |
36149759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 26527381 - 26527621
Alignment:
| Q |
12 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctccttcaccgc |
111 |
Q |
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|||| |||||||||||||||||| | ||||||| |||||||| || | | || ||||||| | ||||| |||| ||||| ||||||||||||||| | |
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| T |
26527381 |
acatgtgcactcaaaatagatgagatagaagaa---cactctcccaagctagaaaaagaagtgcacatgaatgaaagtgattttccgcctccttcaccac |
26527477 |
T |
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| Q |
112 |
------cgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
205 |
Q |
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|||||| ||| ||| || ||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26527478 |
taccaccgccactgctgtatgaagtggaagtgattccccacaccatggaagctcatgttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
26527577 |
T |
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| Q |
206 |
aatagacgacaaagaagaacactctcctaatcaaggacaagaag |
249 |
Q |
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| T |
26527578 |
aatagacgacaaagaagaacagtctcctaagcaaggacaagaag |
26527621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 26527358 - 26527421
Alignment:
| Q |
169 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcc |
232 |
Q |
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||||||||||||| || |||||||||| ||||| |||||||| || | ||||||||||||||| |
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| T |
26527358 |
aagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagatagaagaacactctcc |
26527421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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