View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_3 (Length: 548)
Name: NF15544_low_3
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 39 - 531
Target Start/End: Original strand, 34829508 - 34830000
Alignment:
| Q |
39 |
caaaccatcaacttctatgtagctatattgtcaccattatacattaataatctacgaagaagtttttcacatagctaatttctgctcaacccagctttgt |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34829508 |
caaaccatcaacttctatgtagctatattgtcaccattatacattaataatctacgaagaagtttttcacatagctaatttctgctcaacccagctttgt |
34829607 |
T |
|
| Q |
139 |
ttgcatccattgccaatcgaataaaggaagagccatcaccttgcataaccaagtttggaataaattgggattcagagcttcccaaattatgaccaacatg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34829608 |
ttgcatccattgccaatcgaataaaggaagagccatcaccttgcataaccaagtttggaataaattgggattcagagcttcccaaattatgaccaacatg |
34829707 |
T |
|
| Q |
239 |
gtcataatttatgaaaggattgtagtattccataggaggagcttcattatcatcatggacatttccttgatttatcatcagttcattttcataactagta |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34829708 |
gtcataatttatgaaaggattgtagtattccataggaggagcttcattatcatcatggacatttccttgatttatcatcagttcattttcataactagta |
34829807 |
T |
|
| Q |
339 |
gtaaccttgataatattggaattattaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcat |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34829808 |
gtaaccttgataatattggaattattaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcat |
34829907 |
T |
|
| Q |
439 |
tactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttccatagttggtgtagaggactagtatcttcttga |
531 |
Q |
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| T |
34829908 |
tactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttccatagttggtgtagaggactagtatcttcttga |
34830000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 511
Target Start/End: Complemental strand, 30506037 - 30505888
Alignment:
| Q |
362 |
attaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgc |
461 |
Q |
| |
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|||||||||||| |||| ||||| ||||| || || || || || |||||||| | || |||||||||||||||| ||| ||||| || || |||||| |
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| T |
30506037 |
attaccaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatgatactgatgc |
30505938 |
T |
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| Q |
462 |
atcacccaattggtcttctcaggcttcttttgccttccatagttggtgta |
511 |
Q |
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| T |
30505937 |
atcacccaatttgttttctctggctttctttgttttccatagtttgtgta |
30505888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 28948725 - 28948855
Alignment:
| Q |
401 |
ctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttcca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948725 |
ctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttcca |
28948824 |
T |
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| Q |
501 |
tagttggtgtagaggactagtatcttcttga |
531 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28948825 |
tagttggtgtagaggactagtatcttcttga |
28948855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 481
Target Start/End: Complemental strand, 43015288 - 43015191
Alignment:
| Q |
384 |
tgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctc |
481 |
Q |
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| T |
43015288 |
tgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctc |
43015191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 374 - 481
Target Start/End: Complemental strand, 4235894 - 4235787
Alignment:
| Q |
374 |
ttgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattg |
473 |
Q |
| |
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||||| ||| ||||| ||||| || | ||||||| |||| ||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
4235894 |
ttgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaatta |
4235795 |
T |
|
| Q |
474 |
gtcttctc |
481 |
Q |
| |
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|||||||| |
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| T |
4235794 |
gtcttctc |
4235787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 487
Target Start/End: Complemental strand, 38887192 - 38887070
Alignment:
| Q |
365 |
accaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatc |
464 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| || || || ||||| || ||||| || |||||||| |||||||| | ||||| |||||||| ||||| |
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| T |
38887192 |
accaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcata |
38887093 |
T |
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| Q |
465 |
acccaattggtcttctcaggctt |
487 |
Q |
| |
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|||||||| || ||||| ||||| |
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| T |
38887092 |
acccaatttgttttctctggctt |
38887070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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