View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15544_low_30 (Length: 277)
Name: NF15544_low_30
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 26951854 - 26952093
Alignment:
| Q |
24 |
gaaagtataaggacgcgtgcagtgttttctcagcatacttgtgacaccattgtagcccatgctgcccctgctataccatagcctaaaaagctgcataaaa |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
26951854 |
gaaagtataacgacgcgtgcagtgttttctcagcatacttgtgacaccattgtagcccatgctgcccccgctataccatagcctaaacagctgcataaaa |
26951953 |
T |
|
| Q |
124 |
gtatatcaccaattccatttataacactggcagcagccaaagcctttaagggtccccatgaatctttcataccaaggctgcaagaatgaatgtgaatacc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26951954 |
gtatatcaccaattccatttataacactggcagcagccaaagcctttaagggtccccatgaatctttcataccaaggctgcaagaatgaatgtgaatacc |
26952053 |
T |
|
| Q |
224 |
cagacaatgaattaatttagaacccaatgcttagaataat |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26952054 |
cagacaatgaattaatttagaacccaatgcttagaataat |
26952093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 26989134 - 26989329
Alignment:
| Q |
56 |
gcatacttgtgacaccattgtagcccatgctgcccctgctataccatagcctaaaaagctgcataaaagtatatcaccaattccatttataacactggca |
155 |
Q |
| |
|
||||||||| || ||| |||||||||||| ||||| || || |||||| |||| | ||||| | || ||||||||||||||||||||||| ||||||| |
|
|
| T |
26989134 |
gcatacttgggatgccaatgtagcccatgcagccccagcaatcccatagtttaaatatctgcacagaattatatcaccaattccatttataatactggca |
26989233 |
T |
|
| Q |
156 |
gcagccaaagcctttaagggtccccatgaatctttcataccaaggctgcaagaatgaatgtgaatacccagacaatgaattaatttagaacccaat |
251 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| |||| ||| |||||| ||||| ||| ||||||||| | | |||||||| |
|
|
| T |
26989234 |
gcagccaaagccttcaagggtccccaagaatctttcataccaagactgcgtgaaagaatgtcgataccaagaatatgaattaaatgacaacccaat |
26989329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 27003730 - 27003897
Alignment:
| Q |
56 |
gcatacttgtgacaccattgtagcccatgctgcccctgctataccatagcctaaaaagctgcataaaagtatatcaccaattccatttataacactggca |
155 |
Q |
| |
|
||||||||| || ||| |||||||||||| ||||| || || ||||||||||| | ||||| | || ||||||||||||||||||||||| ||||||| |
|
|
| T |
27003730 |
gcatacttgggatgccaatgtagcccatgcagccccagcaatcccatagcctaagtatctgcacagaattatatcaccaattccatttataatactggca |
27003829 |
T |
|
| Q |
156 |
gcagccaaagcctttaagggtccccatgaatctttcataccaaggctgcaagaatgaatgtgaatacc |
223 |
Q |
| |
|
|| ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| |||||| ||||| |
|
|
| T |
27003830 |
gcggccaaagccttcaagggtccccaagaatctttcataccaagactgcatgaaaaaatgtggatacc |
27003897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 26944151 - 26944293
Alignment:
| Q |
57 |
catacttgtgacaccattgtagcccatgctgcccctgctataccatagcctaaaaagctgcataaaagtatatcaccaattccatttataacactggcag |
156 |
Q |
| |
|
|||||||| || ||||||| |||||||| |||||||| || |||||||||||| || |||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26944151 |
catacttgcgatgccattgtggcccatgcagcccctgcaattccatagcctaaataggtgcacaaaactatatcaccaacaccatttataacactggcag |
26944250 |
T |
|
| Q |
157 |
cagccaaagcctttaagggtccccatgaatctttcataccaag |
199 |
Q |
| |
|
|||| ||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
26944251 |
cagctaaagctttcaagggtccccaggaatctttcataccaag |
26944293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 26978515 - 26978366
Alignment:
| Q |
55 |
agcatacttgtgacaccattgtagcccatgctgcccctgctataccatagcctaaaaagctgcataaaagtatatcaccaattccatttataacactggc |
154 |
Q |
| |
|
||||||||||||| ||| ||||||||| || ||||| || || |||||||||||| | ||||| | || || ||||||||||||||||||| ||| || |
|
|
| T |
26978515 |
agcatacttgtgatgccaatgtagcccaagcagccccagcaatcccatagcctaaatatctgcacagaatgatgtcaccaattccatttataatactagc |
26978416 |
T |
|
| Q |
155 |
agcagccaaagcctttaagggtccccatgaatctttcataccaaggctgc |
204 |
Q |
| |
|
| ||||||||||||| | ||||||||| || |||||||||||||| |||| |
|
|
| T |
26978415 |
aacagccaaagccttcaggggtccccaagagtctttcataccaagactgc |
26978366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University