View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_32 (Length: 271)
Name: NF15544_low_32
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 12150459 - 12150285
Alignment:
| Q |
22 |
gaggtaataaggctatataatctctttttctatattatgtttcttcaaagttttatgcatatttttctccctattaaaatgtactatcaattattggttg |
121 |
Q |
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| T |
12150459 |
gaggtaataaggcaatataatctctttttctatattatttttcttcaaagttttatgcatatttttctccctattaaaatgtactatcaattattggttg |
12150360 |
T |
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| Q |
122 |
cagagaaatgatgatcaaagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttga |
196 |
Q |
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| T |
12150359 |
cagagaaatgatgatcagagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttga |
12150285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 12143474 - 12143302
Alignment:
| Q |
22 |
gaggtaataaggctatataatctctttttctatattatgtttcttcaaagttttatgcatatttttctccctattaaaatgtactatcaattattggttg |
121 |
Q |
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|||||||||||||||| |||||||||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12143474 |
gaggtaataaggctatttaatctctttttctat--tatttttcttcataattttatgcatatttttctccctattaaaatgtactatcaattattggttg |
12143377 |
T |
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| Q |
122 |
cagagaaatgatgatcaaagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttga |
196 |
Q |
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| T |
12143376 |
cagagaaactacgaacggagttacaatcaagaggaggagaccggaggatggaaacaatcggctagggacttttga |
12143302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 12150199 - 12150135
Alignment:
| Q |
191 |
ttttgagaacatttaggaactttaatcattgtgttttctggtgtgatgatatcatagtgttctgt |
255 |
Q |
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| T |
12150199 |
ttttgagaacatttaggaactttaatcattgtgttttctggtgtgatgatatcatagtgttctgt |
12150135 |
T |
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