View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15544_low_33 (Length: 268)
Name: NF15544_low_33
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 4530539 - 4530290
Alignment:
| Q |
18 |
gtaaaatattaatcgatttaagagagtatat--tcaaaaccacatccatgattgaggaaagatttt-gacacaagtaaaatacttgaataatgatggtct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
4530539 |
gtaaaatattaatcgatttaagagagtatatattcaaaaacacatccatgattgaggaaagatttttgactcaagtaaaatacttgagtaatgatggtct |
4530440 |
T |
|
| Q |
115 |
cataggaaggatctcaacttttcggatgcaagagactttacgccagttttttccatatggttttgcatatctttcctctaataatgagcagttataaatg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4530439 |
cataggaaggatctcaacttttcggatgcgagagattttacgccagtcttgaccatatggttttgcatatctttcctctaataatgagcagttatacatg |
4530340 |
T |
|
| Q |
215 |
caaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt |
264 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
4530339 |
caaagtttctgcaaagatacaaggttacgcatcgcttcgggcagtgatgt |
4530290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 4499488 - 4499433
Alignment:
| Q |
60 |
tccatgattgaggaaagattttgacacaagtaaaatacttgaataatgatggtctc |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
4499488 |
tccatgattgaggaaagattttgactcaagtaaaatacttgagtaatgatggtctc |
4499433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 4499084 - 4499021
Alignment:
| Q |
201 |
agcagttataaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt |
264 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
4499084 |
agcagttagaaatgcaaagtttctgcaaagatacaaggttactcatttcttcgggcagtgatgt |
4499021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 4520970 - 4520878
Alignment:
| Q |
19 |
taaaatattaatcgatttaagagagtatattcaaaaccacatccatgattgaggaaagattttgacacaagtaaaatacttgaataatgatgg |
111 |
Q |
| |
|
||||| ||| || ||| ||||||||| ||||| || || ||||||||||| ||||||||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
4520970 |
taaaaaattgatggatataagagagtggattcagaaatacctccatgattgatgaaagattttgactcaagaaaaatacttgagtaatgatgg |
4520878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 18033394 - 18033448
Alignment:
| Q |
210 |
aaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
18033394 |
aaatgcaaagtttctgcaaagatacaaggttactcatttcttcgggcagtgatgt |
18033448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University