View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_5 (Length: 474)
Name: NF15544_low_5
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Complemental strand, 3656362 - 3655922
Alignment:
| Q |
14 |
caaaggcatagaaagtggcggtacaatgaccatcaaggagaaatggtatatttctaccttaacagatgtggaagaagttaaaatggtaataaggatgtta |
113 |
Q |
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| T |
3656362 |
caaaggcatagaaagtggcggtacaataaccatcaaggagaaatggtatatttctaccttaacagatgtggaagaagttaaaatggtaataaggatgtta |
3656263 |
T |
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| Q |
114 |
cccatatgggccacaaccataatgttttggacaatccatgctcaaatgacaacattctcagtatcacaagcaacaaccatggattgtcaaattggaacat |
213 |
Q |
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| T |
3656262 |
cccatatgggccacaaccataatgttttggacaatccatgctcaaatgacaacattctcagtatcacaagcaacaaccatggattgtcaaattggaacat |
3656163 |
T |
|
| Q |
214 |
ttcaaatcccagcagcatcaatgaccgtcttcttaatcggaactattctcctaaccgttcctttctatgaccgcttcattcgaccagtcgcnnnnnnngt |
313 |
Q |
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| T |
3656162 |
ttcaaatcccagcagcatcaatgaccgtcttcttaatcggaactattctcctaaccgttcctttctacgaccgcttcattcgacccgtcgcaaaaaaagt |
3656063 |
T |
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| Q |
314 |
actaaacaactcacacggattcacccctttacaacgcatcggtgttggtttagtcctctcagtaatatccatggttgcggcagcactcatagaaatgaag |
413 |
Q |
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| T |
3656062 |
actaaacaactcacacggattcacccctttacaacgcattggtgttggtttagtcctctcagtaatatccatggttgcggcagcactcatagaaatgaag |
3655963 |
T |
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| Q |
414 |
cgattgaaattcgcacgatcacatggttttgtagacgatcc |
454 |
Q |
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| T |
3655962 |
cgattgaaattcgcaagatcacatggttttgtagacgatcc |
3655922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 263
Target Start/End: Complemental strand, 3645639 - 3645439
Alignment:
| Q |
66 |
tctaccttaacagatgtggaagaagttaaaatggtaataaggatgttacccatatgggccacaaccataatgttttggacaatccatgctcaaatgacaa |
165 |
Q |
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| T |
3645639 |
tctaccttaaccgatatagaagaagtgaaattggtgctaagaatgctccctatatgggcatcaaccatcgtgttttggactgttcaagttcaaatgatga |
3645540 |
T |
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| Q |
166 |
cattctcagtatcacaagcaacaaccatggattgtcaaattggaa---catttcaaatcccagcagcatcaatgaccgtcttcttaatcggaactattct |
262 |
Q |
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| T |
3645539 |
cactctcggtatcacaggcaaccactatggatcgccacattggaaaatcatttcaaatcccagcagcatcaatgacatcctttttaattggaactattct |
3645440 |
T |
|
| Q |
263 |
c |
263 |
Q |
| |
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| T |
3645439 |
c |
3645439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 41875363 - 41875500
Alignment:
| Q |
53 |
gaaatggtatatttctaccttaacagatgtggaagaagttaaaatggtaataaggatgttacccatatgggccacaaccataatgttttggacaatccat |
152 |
Q |
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|||||||||| | || |||||||||||||| |||||||| ||| |||| |||| |||||||| |||||||||||||| ||||||||||||||| | || |
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| T |
41875363 |
gaaatggtatctatcaaccttaacagatgttgaagaagtaaaattggttttaagaatgttaccaatatgggccacaacgataatgttttggacagtatat |
41875462 |
T |
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| Q |
153 |
gctcaaatgacaacattctcagtatcacaagcaacaac |
190 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||| |
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| T |
41875463 |
gcacaaatgaccacattctcagtatcacaagcaacaac |
41875500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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