View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15544_low_7 (Length: 447)
Name: NF15544_low_7
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15544_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 36353168 - 36352743
Alignment:
| Q |
16 |
acaaactatatatagccaatatcacatcacatacatgatatcagtacactcattctccatatacccataccattggaaggctcatttccaaatgtttgat |
115 |
Q |
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| T |
36353168 |
acaaactatatatagccaatatcacatcacatacatgatatcagtacactcattctccatatacccataccattggaaggctcatttccaaatgtttgat |
36353069 |
T |
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| Q |
116 |
tttgagaaagagaagggttggaatcataatgttgtgccaactcatgttgtaagtagtgtgtgtttagtgtttagtaaatatatatttgaagaaatttgat |
215 |
Q |
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| T |
36353068 |
tttgagaaagagaagggttggaatcataatgttgtgccaactcatgttgtaagtagtgtgtgtttggtgtttagtaaatatatatttgaagaaatttgat |
36352969 |
T |
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| Q |
216 |
tttgtaaaatttgagtttaaagtgaagtaatttatatccgtatatttctatttgaaaacaagtttaatgtaaaggttagcataaaatcacatgtacacta |
315 |
Q |
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| T |
36352968 |
ttcgtaaaatt-gagtttaaagtgaagtaatttatatccatatatttctatttgaaaacaagtttaatgtaaaggttagcataaaatcacatgtacacta |
36352870 |
T |
|
| Q |
316 |
aattcgtgatagcccaagtttgaaaactagtgatgccaccgtgcgattgaccaaagaaatatttggtattaagttggctttgacaaaatcaaagtgacat |
415 |
Q |
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| T |
36352869 |
aattcgtgatagcccgagtttgaaaactagtgatggcaccgtgcgattgaccaaagaaatatttggtattaagttggctttgacaaaatcaaagtgacat |
36352770 |
T |
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| Q |
416 |
tatttattgaagttctataagtataat |
442 |
Q |
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| T |
36352769 |
tatttattgaagttctataagtataat |
36352743 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 48360910 - 48360951
Alignment:
| Q |
208 |
aatttgattttgtaaaatttgagtttaaagtgaagtaatttat |
250 |
Q |
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| T |
48360910 |
aatttgattttgtaaaatt-gagtttgaagtgaagtaatttat |
48360951 |
T |
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