View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15544_low_9 (Length: 443)

Name: NF15544_low_9
Description: NF15544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15544_low_9
NF15544_low_9
[»] chr3 (5 HSPs)
chr3 (23-427)||(35374500-35374904)
chr3 (218-419)||(35380949-35381150)
chr3 (279-403)||(35356797-35356921)
chr3 (279-403)||(35351663-35351787)
chr3 (183-403)||(35367719-35367939)
[»] chr6 (2 HSPs)
chr6 (160-283)||(30811863-30811986)
chr6 (329-403)||(30812002-30812076)
[»] chr7 (3 HSPs)
chr7 (280-403)||(10696703-10696826)
chr7 (316-404)||(47905986-47906074)
chr7 (316-404)||(47908758-47908846)
[»] chr8 (1 HSPs)
chr8 (324-403)||(40735738-40735817)


Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 23 - 427
Target Start/End: Original strand, 35374500 - 35374904
Alignment:
Q  23 ctccctattttcttcaaacttcttccccatcataatattggttctgctgtttctcgtactacttatccactggattctaactcgccttcaaacaatgctg 122  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35374500 ctccctattttcttcacacttcttccccatcataatattggttctgctgtttctcgtactacttatccactggattctaactagccttcaaacaatgctg 35374599  T
Q  123 ataaggcacgaagatacgaatacctcatgtcactattctaacgaccaattgcaaacacatgtcgtccacaacttagacgagttggtcataaacaccatcc 222  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35374600 ataaggcacgaagatacgaatacctcacgtcactattctaacgaccaattgcaaacacatgtcgtccacaacttagacgagttggtcagaaacaccatcc 35374699  T
Q  223 ccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggtacact 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35374700 ccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggtacact 35374799  T
Q  323 ccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacctaattgtcctctatgtcgctccagttgtcatctcaatcac 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35374800 ccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacctaattgtcctctatgtcgctccagttgtcatctcaatcac 35374899  T
Q  423 tctat 427  Q
    |||||    
T  35374900 tctat 35374904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 218 - 419
Target Start/End: Original strand, 35380949 - 35381150
Alignment:
Q  218 catccccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggt 317  Q
    ||||| || ||| |||||||  ||||| |||||| | ||||||| || |||||||||||||||||||||| |||| |||||||||||| ||  ||||||     
T  35380949 catcctctcctccgtctacaacgctaaatatgcacaagaagaatttcaacgtgattgtgttatttgcttgaatgaatttgaagacaatgataccattgga 35381048  T
Q  318 acactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacctaattgtcctctatgtcgctccagttgtcatctca 417  Q
    || ||||||||||||||||| || |||||||||   |||||| ||| |||||||| |||| |||||||||||||||||||||||||||| |||| |||||    
T  35381049 acgctccctctttgttcccagagtttccatctccgttgcattcaagattggcttcctaaacaacctaattgtcctctatgtcgctccagctgtcttctca 35381148  T
Q  418 at 419  Q
    ||    
T  35381149 at 35381150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 279 - 403
Target Start/End: Original strand, 35356797 - 35356921
Alignment:
Q  279 atttgcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaa 378  Q
    |||||||||| ||| |||||| ||||| || ||||| | || |||||||||||||||||||  ||||||||||  |||||||| |||||||||| ||||     
T  35356797 atttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcccacactttccatctcgcttgcattgatgcttggcttcataaac 35356896  T
Q  379 aacctaattgtcctctatgtcgctc 403  Q
    |||||||||||||||||||||||||    
T  35356897 aacctaattgtcctctatgtcgctc 35356921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 403
Target Start/End: Original strand, 35351663 - 35351787
Alignment:
Q  279 atttgcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaa 378  Q
    |||||||||| ||| |||||| ||||| || ||||| | || |||||||||||||||||||  ||||||||||  |||||||| |||||||||| ||||     
T  35351663 atttgcttggttgaatttgaaaacaatgattacattcgcaccctccctctttgttcccacattttccatctcgcttgcattgatgcttggcttcataaac 35351762  T
Q  379 aacctaattgtcctctatgtcgctc 403  Q
    ||||||  |||||||| ||||||||    
T  35351763 aacctagctgtcctctttgtcgctc 35351787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 183 - 403
Target Start/End: Original strand, 35367719 - 35367939
Alignment:
Q  183 gtcgtccacaacttagacgagttggtcataaacaccatccccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttattt 282  Q
    |||||||||||||||||| ||  | | ||||||||||||| | | ||  ||||||| ||| |||||||| | |||||||||    |||| ||| | ||||    
T  35367719 gtcgtccacaacttagacaagacgattataaacaccatcctcgtttccatctacacggctcagtatgcacaagaagaatctacgtgtgaatgtatcattt 35367818  T
Q  283 gcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacc 382  Q
    | || ||||| |||||||||||| ||  | ||||||| ||| || ||||||  ||||  || |||||||| || ||||| | ||||||||||||||| ||    
T  35367819 gtttagatgaatttgaagacaatgatcgccttggtaccctctctatttgttatcacacatttcatctcgattgtattgaggtttggcttcgtaaaaaccc 35367918  T
Q  383 taattgtcctctatgtcgctc 403  Q
     ||||||||||| ||||||||    
T  35367919 caattgtcctctgtgtcgctc 35367939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 30811863 - 30811986
Alignment:
Q  160 ctaacgaccaattgcaaacacatgtcgtccacaacttagacgagttggtcataaacaccatccccttctctgtctacactgctaagtatgcaaacgaaga 259  Q
    ||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||  ||||||| |||||||||||||| ||||     
T  30811863 ctaacgaccaactgcaaacacatgtcgttcataacttagacgagttggtcataaataccatctccttctccatctacaccgctaagtatgcaaaagaagc 30811962  T
Q  260 atctctacgtgattgtgttatttg 283  Q
    || |  |||| | |||||||||||    
T  30811963 atttgcacgttactgtgttatttg 30811986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 30812002 - 30812076
Alignment:
Q  329 ttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacctaattgtcctctatgtcgctc 403  Q
    |||||||||||  ||||||||| | |||||||||||||| ||||||||||||||||| || ||||| | ||||||    
T  30812002 ttgttcccacaatttccatctcaattgcattgaagcttgacttcgtaaaaaacctaactgccctctctatcgctc 30812076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 403
Target Start/End: Original strand, 10696703 - 10696826
Alignment:
Q  280 tttgcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaa 379  Q
    |||| |||||||| ||| |||||||| ||  |||| | || || ||||||||||||||||  ||||||||||  ||||||||||| |||||| ||||| |    
T  10696703 tttgtttggatgaatttaaagacaatgatcgcattcgcaccctgcctctttgttcccacactttccatctcgtttgcattgaagcatggcttagtaaaca 10696802  T
Q  380 acctaattgtcctctatgtcgctc 403  Q
    |||||| |||||| | ||||||||    
T  10696803 acctaactgtcctatttgtcgctc 10696826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 404
Target Start/End: Complemental strand, 47906074 - 47905986
Alignment:
Q  316 gtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacctaattgtcctctatgtcgctcc 404  Q
    |||| ||||||||||| |||||||  || |||| ||| |||||||| | ||||||||||  |||  |||| ||||||||||||||||||    
T  47906074 gtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcc 47905986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 404
Target Start/End: Complemental strand, 47908846 - 47908758
Alignment:
Q  316 gtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacctaattgtcctctatgtcgctcc 404  Q
    |||| ||||||||||| |||||||  || |||| ||| |||||||| | ||||||||||  |||  |||| ||||||||||||||||||    
T  47908846 gtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcc 47908758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 40735817 - 40735738
Alignment:
Q  324 cctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacctaattgtcctctatgtcgctc 403  Q
    ||||||||||||||||| |||||| |||  ||||| || ||||||||   |||| ||||||  |||||||||||||||||    
T  40735817 cctctttgttcccacagtttccatgtcgtttgcatcgacgcttggctcactaaacaacctagctgtcctctatgtcgctc 40735738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University