View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15545_high_1 (Length: 277)
Name: NF15545_high_1
Description: NF15545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15545_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 45301019 - 45301282
Alignment:
| Q |
1 |
agcaaatacaatgtagcaaggttnnnnnnntagggcaataccacccttacatagtgttgaaacatatacaaagagatggattcgtccaccacaaataaaa |
100 |
Q |
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| T |
45301019 |
agcaaatacaatgtagcaaggttaaaaaaatagggcaataccaccattacatagtgttgaaacatatacaaagagatggattcgtccaccacaaataaaa |
45301118 |
T |
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| Q |
101 |
atcaatgaattgagctgatttgtgagccttcaaccaccaccaagaatgaagtttgacatgctcgaacaattgcttagagaaaaatgtttattgttaaaag |
200 |
Q |
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| T |
45301119 |
atcaatgaattgagctgatttgtgagccttcaaccaccaccaaaaatgaagtttgacacgctcgaacaattgcttagagaaaaatgtttattgttaaaag |
45301218 |
T |
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| Q |
201 |
ttcttgtatttctctctttttaaatataagcaaa--atacaaaccaactagatcgcctgaaaac |
262 |
Q |
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| T |
45301219 |
tttttgtatttctctctttttaaatataagcaaaatatacaaaccaactagatcgcctgaaaac |
45301282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 32 - 262
Target Start/End: Original strand, 32141353 - 32141575
Alignment:
| Q |
32 |
agggcaataccacccttacatagtgttgaaacatatacaaagagatggattcgtccaccacaaataaaaatcaatgaattgagctgatttgtgagccttc |
131 |
Q |
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| T |
32141353 |
agggcaataccaccatcacatagtgttgaaacatatacaaagagatggagtcgtccaccccgaatgaaaaacagtgaatttagttgatatgtgagccttc |
32141452 |
T |
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| Q |
132 |
aaccaccaccaagaatgaagtttgacatgctcgaacaattgct-tagagaaaaatgtttattgttaaaagttcttgtatttctctctttttaaatataag |
230 |
Q |
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| T |
32141453 |
aaacaccagcaagaatgaaacttgacacacgcgaacaattgctctagagaaaaatgtttattgttaaaattttttg-------ctcttttcaa--ataag |
32141543 |
T |
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| Q |
231 |
caaaatacaaaccaactagatcgcctgaaaac |
262 |
Q |
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| T |
32141544 |
ccaaatgcaagccaactagatcgcctgaaaac |
32141575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 3557996 - 3557803
Alignment:
| Q |
33 |
gggcaataccacccttacatagtgttgaaacatatacaaagagatggattcgtccaccacaaataaaaatcaatgaattgagctgatttgtgagccttca |
132 |
Q |
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|||||||||| || |||||||||||||||| ||||||| ||||| ||| ||||| ||| ||| ||||| || ||| |||||| ||||||||||||| |
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| T |
3557996 |
gggcaataccgccattacatagtgttgaaatcaatacaaatagatgaatttgtccatcacgaatgaaaattaacgaactgagctaggttgtgagccttca |
3557897 |
T |
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| Q |
133 |
accaccaccaagaatgaagtttgacatgctcgaacaattgcttagagaaaaatgtttattgtt-aaaagttcttgtatttctctctttttaaata |
226 |
Q |
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||||||| |||||||||| ||||||| || ||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||||||||||| |
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| T |
3557896 |
gccaccacaaagaatgaagcttgacatattcaaacaattgctt-gagaaaaatgtttactgttaaaaaattcttgcatttcgctctttttaaata |
3557803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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