View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15545_low_1 (Length: 440)
Name: NF15545_low_1
Description: NF15545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15545_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 227 - 422
Target Start/End: Original strand, 36790634 - 36790828
Alignment:
| Q |
227 |
tagatatcaatcctcaaaatattattannnnnnncaatttcaaaataagaaattatctttgcattttagtatacattgtatatggaggatgattgcaaat |
326 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36790634 |
tagatatcaatcctcaaaatattattatttttttcaatttccaaataagaaattatctttgcattttggtatacattgtatatggaggatgattgcaaat |
36790733 |
T |
|
| Q |
327 |
atccataggcctaccctaactagaaaagtaccttttatagtattgtttactaggtttaacaagcagcaactttgttagcattacatttgtaatatc |
422 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36790734 |
atccatag-cctaccctaactagaaaagtaccttttatagtattgtttactaggtttaacaagcagcaactttgttagcattacatttgtaatatc |
36790828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 36790423 - 36790569
Alignment:
| Q |
16 |
aatatctcatcaacaggtcctagaaggtcaattccaggtttcagttcaattgcaggctgatctgtctctgcctcagttgatacaaatgcaataaattttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36790423 |
aatatctcatcaacaggtcctagaaggtcaattccaggtttcagttcaattgcaggctgatctgtctctgcctcagttgatacaaatgcaataaattttc |
36790522 |
T |
|
| Q |
116 |
cctttgggcaaacattgtgagaatacgagcaacagaataagtacctg |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36790523 |
cctttgggcaaacattgtgagaatacgagcaacagaataagtacctg |
36790569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University