View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15545_low_3 (Length: 235)
Name: NF15545_low_3
Description: NF15545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15545_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 35890833 - 35891053
Alignment:
| Q |
1 |
taaattgtatctcggtggtcaagatgttcatccttgtcgcaaaaatgcaggatgcgccatttcctttcatgatcagtatggaaacaattttgaaagtgtc |
100 |
Q |
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| T |
35890833 |
taaattgtatctcggtggtcaagatgttcatccttgtcgcaaaaatgcaagatgcgccatttcctttcatgatcagtatggaaacaattttgaaagtgtc |
35890932 |
T |
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| Q |
101 |
gacatgggtagtctaatagctgctgggcctgttgaagtaaggaaatcatattaacaatctttactattgactgaaattcatgtcagacttatattcaaaa |
200 |
Q |
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| T |
35890933 |
gacatgggtcgtctaatagctgctgggcctgttgaagtaaggaaatcatattaacaatctttactattgactgaaattcatgtcagacttatattcaaaa |
35891032 |
T |
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| Q |
201 |
tggtagaacttagatgaattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
35891033 |
tggtagaacttagatgaattt |
35891053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 35925311 - 35925354
Alignment:
| Q |
158 |
tctttactattgactgaaattcatgtcagacttatattcaaaat |
201 |
Q |
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| T |
35925311 |
tctttactattgactgaaattcttgtgagacttgtattcaaaat |
35925354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 34688923 - 34688878
Alignment:
| Q |
158 |
tctttactattgactgaaattcatgtcagac-ttatattcaaaatg |
202 |
Q |
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| T |
34688923 |
tctttactattgactgaaattcatgtgagtctttatattcaaaatg |
34688878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 34711335 - 34711290
Alignment:
| Q |
158 |
tctttactattgactgaaattcatgtcagac-ttatattcaaaatg |
202 |
Q |
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| T |
34711335 |
tctttactattgactgaaattcatgtgagtctttatattcaaaatg |
34711290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 35545187 - 35545120
Alignment:
| Q |
157 |
atctttactattgactgaaa--ttcatgtcagacttatatt-caaaatggtagaacttagatgaattt |
221 |
Q |
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||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||| || ||||| |
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| T |
35545187 |
atctttaatattgactgaaaaattcatgtgggacttatatttcaaaatggtagaacttacataaattt |
35545120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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