View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15546_high_4 (Length: 297)
Name: NF15546_high_4
Description: NF15546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15546_high_4 |
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| [»] scaffold0247 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 33680050 - 33680320
Alignment:
| Q |
20 |
tcccctcccctaacatgcacaaataa---tttaattataacctgcactgataacatacctattccccaagagtttgtgtagccttagaatcatatcaatt |
116 |
Q |
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||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33680050 |
tcccctcccctaatatgcacaaataacaatttaattataacttgcactgataacatacctgttccccaagagtttgtgtagccttagaatcatatcaatt |
33680149 |
T |
|
| Q |
117 |
tcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacctcaatctacaacttttccggcatctattcaaacctgcacatatag |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33680150 |
tcatcatgggagaaactttctctattgattgcagggtttaaataattcacccacctcaatctacaacttttccggcatctattcaaacctgcgcatatag |
33680249 |
T |
|
| Q |
217 |
tttaataaattttgacataagttaattagttttaactatagaataaaaaagtagatagttctatagaataa |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33680250 |
tttaataaattttgacataagttaattagttttaactatagaataaaaaagtagatagttctatagaataa |
33680320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 33698716 - 33698836
Alignment:
| Q |
87 |
agtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacctcaatctacaacttt |
186 |
Q |
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|||||||||| |||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33698716 |
agtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctctgttgattgcggggtttaaataattcaaccacctcaatctacaacttt |
33698815 |
T |
|
| Q |
187 |
tccggcatctattcaaacctg |
207 |
Q |
| |
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|||| || ||||||||||||| |
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| T |
33698816 |
tccgacacctattcaaacctg |
33698836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 33867036 - 33867175
Alignment:
| Q |
69 |
acatacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcaccc |
168 |
Q |
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|||||||| ||||| || || ||||||| ||||| ||||||||||| |||||| | || ||||| ||||||||||| | ||||||||||||||| | || |
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| T |
33867036 |
acatacctgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctcagaaaaactctctctattgatggtggggtttaaataatttaacc |
33867135 |
T |
|
| Q |
169 |
acctcaatctacaacttttccggcatctattcaaacctgc |
208 |
Q |
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||||||||||||||||||||||||| |||||||| ||||| |
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| T |
33867136 |
acctcaatctacaacttttccggcacctattcaatcctgc |
33867175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 33821808 - 33821944
Alignment:
| Q |
72 |
tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc |
171 |
Q |
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|
||||||||||||| ||| ||||||| ||||| ||||||||| |||||| | || | |||||||| || || |||||||||||||| ||||||| |
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| T |
33821808 |
tacctattccccaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttaatattagggtttaaataatttacccacc |
33821907 |
T |
|
| Q |
172 |
tcaatctacaacttttccggcatctattcaaacctgc |
208 |
Q |
| |
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|||||||||||||||| || ||||||||||| ||||| |
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| T |
33821908 |
tcaatctacaactttttcgacatctattcaatcctgc |
33821944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 33749013 - 33749142
Alignment:
| Q |
72 |
tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc |
171 |
Q |
| |
|
||||||||||||||||| ||||||| ||| || ||||||||| |||||| | || || ||||||| ||||| | |||||||||||||| | ||| | |
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| T |
33749013 |
tacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatggttgggtttaaataatttaaccatc |
33749112 |
T |
|
| Q |
172 |
tcaatctacaacttttccggcatctattca |
201 |
Q |
| |
|
|||||||||||||||| | ||| ||||||| |
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| T |
33749113 |
tcaatctacaactttttctgcacctattca |
33749142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 33734541 - 33734677
Alignment:
| Q |
72 |
tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc |
171 |
Q |
| |
|
||||||||||| | |||||||||| |||||| |||||||||| |||||| | | || ||||| || ||||| ||| ||||||||| ||||||| |
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| T |
33734541 |
tacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctcagcaaagctttcccttttgatgttagggcataaataatttacccacc |
33734640 |
T |
|
| Q |
172 |
tcaatctacaacttttccggcatctattcaaacctgc |
208 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||| |
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| T |
33734641 |
tcaatctacaactttttcgacatctattcaatcctgc |
33734677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 33904600 - 33904735
Alignment:
| Q |
72 |
tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc |
171 |
Q |
| |
|
||||||||||| | |||||||||| |||||| |||||||||| |||||| | | || ||||| || ||||| |||| |||||||||| | ||||| |
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| T |
33904600 |
tacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttgggggttaaataatttaaccacc |
33904699 |
T |
|
| Q |
172 |
tcaatctacaacttttccggcatctattcaaacctg |
207 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| |||| |
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| T |
33904700 |
tcaatctacagctttttcggcacctattcaatcctg |
33904735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 33763448 - 33763507
Alignment:
| Q |
149 |
ggggtttaaataattcacccacctcaatctacaacttttccggcatctattcaaacctgc |
208 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||||||| ||||||||| |||| ||||| |
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|
| T |
33763448 |
ggggcttaaataatttaaccacctcaatctacaactttttcggcatctactcaatcctgc |
33763507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 5470264 - 5470129
Alignment:
| Q |
72 |
tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc |
171 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| |||||||||| |||||| | || || |||| ||||||||| ||| ||||||||||| | ||||| |
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|
| T |
5470264 |
tacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatcctcagaaaagctttttctattgatgttgggctttaaataatttatccacc |
5470165 |
T |
|
| Q |
172 |
tcaatctacaacttttccggcatctattcaaacctg |
207 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||| |
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|
| T |
5470164 |
tcaatctacaactttttcgacatctattcaatcctg |
5470129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 21991 - 21874
Alignment:
| Q |
90 |
ttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacctcaatctacaacttttcc |
189 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||| | || ||| | || || ||||| ||| ||||||||||| ||||||||||||||||||||||| | |
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| T |
21991 |
ttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctccctgttgatgtagggatttaaataatttacccacctcaatctacaactttttc |
21892 |
T |
|
| Q |
190 |
ggcatctattcaaacctg |
207 |
Q |
| |
|
| ||||||||||| |||| |
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|
| T |
21891 |
gacatctattcaatcctg |
21874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 149001 - 149131
Alignment:
| Q |
72 |
tacctattccccaagagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacc |
171 |
Q |
| |
|
||||||||||| | |||||||||| |||||| |||||||| | |||||| | | || ||||| || ||||| |||| |||||||||| | ||||| |
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|
| T |
149001 |
tacctattccctagaagtttgtgtaaccttaggatcatatcgacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacc |
149100 |
T |
|
| Q |
172 |
tcaatctacaacttttccggcatctattcaa |
202 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| |
|
|
| T |
149101 |
tcaatctacagcttttgcggcacctattcaa |
149131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 21306119 - 21306177
Alignment:
| Q |
149 |
ggggtttaaataattcacccacctcaatctacaacttttccggcatctattcaaacctg |
207 |
Q |
| |
|
|||| |||| ||||| | ||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
21306119 |
ggggcttaagtaatttaaccacctcaatctacaactttttctgcatctattcaatcctg |
21306177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 24346 - 24289
Alignment:
| Q |
150 |
gggtttaaataattcacccacctcaatctacaacttttccggcatctattcaaacctg |
207 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||| || || |||||||| |||| |
|
|
| T |
24346 |
gggtttaaataatttacccatcttaatctacaactttttcgacacctattcaatcctg |
24289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 90192 - 90091
Alignment:
| Q |
86 |
gagtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcggggtttaaataattcacccacctcaatctacaactt |
185 |
Q |
| |
|
|||||| |||| |||||| |||||||||| |||||| | || || |||||| | ||||| | ||||||||||| || | |||||| |||||||||||| |
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|
| T |
90192 |
gagtttttgtaaccttaggatcatatcaacttcatcctcagaaaatctttctttgttgatggttgggtttaaatagttaaaccaccttaatctacaactt |
90093 |
T |
|
| Q |
186 |
tt |
187 |
Q |
| |
|
|| |
|
|
| T |
90092 |
tt |
90091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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