View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15546_low_1 (Length: 808)
Name: NF15546_low_1
Description: NF15546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15546_low_1 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 8632055 - 8631769
Alignment:
| Q |
20 |
ggaaacaatcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtagtgatcaagttcctattaccccatcaag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
8632055 |
ggaaacaatcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtag-gatcaagttcctattaccccatccag |
8631957 |
T |
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| Q |
120 |
caaaaacttataacttaaactacttttgtaagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtc |
219 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
8631956 |
caaaaacttataacttagactacttttgtaagataaaatcttatattagtgaaaagttgtgataaatttattttgtttcattccattatatttgattgtc |
8631857 |
T |
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| Q |
220 |
ttattgcaaatataatataaatgtcatacatgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctatat |
307 |
Q |
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| T |
8631856 |
ttattgcgaatataatataaatatcatacatgttagtcgtaactagcaatttaaaaataatttgttcaaaaacagtcttcatctatat |
8631769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 345 - 426
Target Start/End: Complemental strand, 17743780 - 17743699
Alignment:
| Q |
345 |
ttttgaaagaatttttaaataaattattattaggtcgtggaccggtataataatcttgggccagagatacgccatatgtggt |
426 |
Q |
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| T |
17743780 |
ttttgaaagaatttttaaataatctactattacgtcgtggaccggtataataatattgggccagaggtacgtcatatgtggt |
17743699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 428
Target Start/End: Original strand, 5716254 - 5716337
Alignment:
| Q |
345 |
ttttgaaagaatttttaaataaattattattaggtcgtggaccggtataataatcttgggccagagatacgccatatgtggtcc |
428 |
Q |
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| T |
5716254 |
ttttaaaagaatttttaaataatttactattacgttgtggaccggtataataatattgggtcagaggtacatcatatgtggtcc |
5716337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 37108463 - 37108536
Alignment:
| Q |
172 |
aaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtca |
245 |
Q |
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| T |
37108463 |
aaagttgtgataaatttattgtgtcccatatcattatatttgattgcgttattacaaataaaatttaaatgtca |
37108536 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 37609060 - 37609285
Alignment:
| Q |
17 |
agaggaaacaatcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtagtgatcaagttcctattaccccatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37609060 |
agaggaaacaatcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtag-gatcaagttcctattaccccatc |
37609158 |
T |
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| Q |
117 |
aagcaaaaacttataacttaaactacttttgtaagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgatt |
216 |
Q |
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||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
37609159 |
cagcaaaaacttttaacttagacta-ttttgtaagataaaatcttatattagtgaaaagttgtgataaatttattttgtttcattccattatatttgatt |
37609257 |
T |
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| Q |
217 |
gtcttattgcaaatataatataaatgtc |
244 |
Q |
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| T |
37609258 |
gtcttattgcgaatataatataaatgtc |
37609285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 22861313 - 22861403
Alignment:
| Q |
160 |
ttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtcatacat |
250 |
Q |
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||||| |||||||| |||||| ||||||||||| ||||| ||||||||| |||||||||||||||||| |||||||||| ||||||| |
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| T |
22861313 |
ttataccagtgaaagtttgtgagaaatttattttatttcaaagcattatatttgattgtcttattgcaaatgtaatataaatagcatacat |
22861403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 37609284 - 37609331
Alignment:
| Q |
295 |
tcttcatctatatcagacccgtgcgatagtacaggtgaaaagtctagt |
342 |
Q |
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| T |
37609284 |
tcttcttctatatcacacccgtgcgatagcacgggtgaaaagtctagt |
37609331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 6e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 342 - 503
Target Start/End: Original strand, 31007631 - 31007792
Alignment:
| Q |
342 |
ttcttttgaaagaatttttaaataaattattattaggtcgtggaccggtataataatcttgggccagagatacgccatatgtggtccagattgacccggt |
441 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||| |||| |
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| T |
31007631 |
ttcttttgaaggaatttttatataaattattattaggtcgtggaccggtataataatcttgggccaaagatatgccatatgtgatccaaattgactcggt |
31007730 |
T |
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| Q |
442 |
aactaatttaacttgggccacatttacgttccaacttgtctgttatgctctgacttgccaaa |
503 |
Q |
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| T |
31007731 |
aactaatttaacttgggccacctttacgttccaacttgtctgttatgctctgacttgccaaa |
31007792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 734 - 793
Target Start/End: Original strand, 31008636 - 31008695
Alignment:
| Q |
734 |
atggttgtatctttatgtttgtcaatattttgttagttcatattttatgtgtttttaatt |
793 |
Q |
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| T |
31008636 |
atggttgtatctttatgtttgtcaatattttattagttcatattttatgtatttttaatt |
31008695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 148 - 342
Target Start/End: Original strand, 72685 - 72877
Alignment:
| Q |
148 |
taagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtcata |
247 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||| |
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| T |
72685 |
taagataaaatcttatatcagtgaaa-gttgaaataaatttattttgtttcatgtcattatattcgatt-tcttattgtgaatataaggtaaatgtcata |
72782 |
T |
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| Q |
248 |
catgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctatatcagacccgtgcgatagtacaggtgaaaagtctagt |
342 |
Q |
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| T |
72783 |
catgttagtagcaactaacaatttaaagatcatttgtttaaaactaatcttcatctatatcatatccgtgcgatagcacgggtgaaaagtctagt |
72877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 46673531 - 46673457
Alignment:
| Q |
231 |
ataatataaatgtcatacatgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctat |
305 |
Q |
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|||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||| |
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| T |
46673531 |
ataatataaatgtcttacatgttagtcacaactagcaatttaaaaataatttgtccaaaaacaatcttcatctat |
46673457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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