View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15546_low_11 (Length: 259)

Name: NF15546_low_11
Description: NF15546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15546_low_11
NF15546_low_11
[»] chr6 (1 HSPs)
chr6 (7-254)||(23507727-23507974)
[»] chr2 (5 HSPs)
chr2 (172-224)||(16942455-16942507)
chr2 (172-224)||(17013120-17013172)
chr2 (172-215)||(15120016-15120059)
chr2 (178-224)||(36643665-36643711)
chr2 (159-215)||(28572531-28572587)
[»] chr4 (1 HSPs)
chr4 (183-226)||(50247989-50248032)
[»] chr3 (2 HSPs)
chr3 (159-224)||(34285420-34285485)
chr3 (195-224)||(46895919-46895948)
[»] scaffold0370 (1 HSPs)
scaffold0370 (178-220)||(474-516)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 23507727 - 23507974
Alignment:
Q  7 gctatatatagctcttttctgttttgattcaaaaaaggtctttactcctttaataatttttgtactatgttgagnnnnnnnctaagcaatgtattgtttt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       |||||||||||||||||||    
T  23507727 gctatatatagctcttttctgttttgattcaaaaaaggtctttactcctttaataatttttgtactatattgagaaaaaaactaagcaatgtattgtttt 23507826  T
Q  107 ataaaattcatgtaccgacaaatacaaaatcttacatgatnnnnnnngaaaagaaatgataatgggtgccctaagggtactctttcacaaccttaaatag 206  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507827 ataaaattcatgtaccgacaaatacaaaatcttacatgataaaaaaagaaaagaaatgataatgggtgccctaagggtactctttcacaaccttaaatag 23507926  T
Q  207 taagtttttataaaaattaagagcaaatagtcactttagtctctgctc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507927 taagtttttataaaaattaagagcaaatagtcactttagtctctgctc 23507974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 16942507 - 16942455
Alignment:
Q  172 gtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt 224  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  16942507 gtgccctaagggcactctttaacaaccttaaatagcaagtttttataaaaatt 16942455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 17013172 - 17013120
Alignment:
Q  172 gtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt 224  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  17013172 gtgccctaagggcactctttaacaaccttaaatagcaagtttttataaaaatt 17013120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 15120016 - 15120059
Alignment:
Q  172 gtgccctaagggtactctttcacaaccttaaatagtaagttttt 215  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||    
T  15120016 gtgccctaagggcactctttaacaaccttaaatagtaagctttt 15120059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 36643711 - 36643665
Alignment:
Q  178 taagggtactctttcacaaccttaaatagtaagtttttataaaaatt 224  Q
    |||||| ||||||  |||||||||||||||||||||||||| |||||    
T  36643711 taagggcactcttcgacaaccttaaatagtaagtttttatagaaatt 36643665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 28572531 - 28572587
Alignment:
Q  159 gaaatgataatgggtgccctaagggtactctttcacaaccttaaatagtaagttttt 215  Q
    |||||| ||| | ||||||||||| |||| ||| ||||| |||||||||||||||||    
T  28572531 gaaatgttaacgagtgccctaaggatactttttaacaactttaaatagtaagttttt 28572587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 50248032 - 50247989
Alignment:
Q  183 gtactctttcacaaccttaaatagtaagtttttataaaaattaa 226  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  50248032 gtactctttaacaaccttaaatagtaagtttttatagaaattaa 50247989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 34285485 - 34285420
Alignment:
Q  159 gaaatgataatgggtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt 224  Q
    |||||| ||| | |||| ||||||||||||||| | ||| ||||||||||| ||||||||||||||    
T  34285485 gaaatgttaacgagtgctctaagggtactctttaataactttaaatagtaaatttttataaaaatt 34285420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 46895919 - 46895948
Alignment:
Q  195 aaccttaaatagtaagtttttataaaaatt 224  Q
    ||||||||||||||||||||||||||||||    
T  46895919 aaccttaaatagtaagtttttataaaaatt 46895948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 516 - 474
Alignment:
Q  178 taagggtactctttcacaaccttaaatagtaagtttttataaa 220  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||    
T  516 taagggcactctttaacaaccttaaatagtaagtttttgtaaa 474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University