View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15546_low_2 (Length: 552)
Name: NF15546_low_2
Description: NF15546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15546_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 41074833 - 41074540
Alignment:
| Q |
13 |
aagaatatagagttgagaaatattaacattattaaaattattaacttagaataataaattacatatttattttccatgagaactatgtctaagnnnnnnn |
112 |
Q |
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| T |
41074833 |
aagaaaatagagttgagaaatattaacattattaaaatgattaacttagaataataaattacatatttattttccatgagaactatgtctaagaaaaaaa |
41074734 |
T |
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| Q |
113 |
nccaaatcagaataaccgagaagcaagaaataaaatagaacacaa-----ttgcaaacctcttcagaggaagaggtctttatgggaataaaaggaaacaa |
207 |
Q |
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| T |
41074733 |
accaaatcagaataaccgagaagcaagaaataaaatagaacacaaattaattgcaaacctcttcagaggaagaggtctttgtgggaataaaaagaaacaa |
41074634 |
T |
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| Q |
208 |
tgattatgtataaaactaattaatttatgcacataaatctgaaaatggagtataaagaatctcatggataatttcaacttaccatgtgatgaac |
301 |
Q |
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| T |
41074633 |
tgattatgtataaaactaattaatttatgcacataaatctgaaaatggagtataaagaatctcatggataatttcaacttaccatgtgatgaac |
41074540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 357 - 536
Target Start/End: Complemental strand, 41074484 - 41074305
Alignment:
| Q |
357 |
gacattagtgtgagtttcaaagacatacttatagcatctgaaaaagaagatctactcaatagttgtgaaaattaaaacagatctaatctctttcacatgt |
456 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41074484 |
gacattagtgtgagtttcaaagacatacttatagcatctgaaaaagaagatctactcaatagttgtgaaaattgaaacagatctaatctctttcacatgt |
41074385 |
T |
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| Q |
457 |
tagcagctgtatgtaatttacacacaaatgcaaatcctgtaacaaaaattataaaccaacaatttccagtatgacataat |
536 |
Q |
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| T |
41074384 |
tagcagctgcatgtaatttacacataaatgcaaatcctataacaaaaattataaaccaacaatttccagtatgacataat |
41074305 |
T |
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