View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15546_low_3 (Length: 471)
Name: NF15546_low_3
Description: NF15546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15546_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 783073 - 783528
Alignment:
| Q |
1 |
ttcttctttacacgtacagactaccatatttagttgctaatgttagaacatttcccgtagtaatagtaacttacttattgagcattgttgcatatcgatg |
100 |
Q |
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| T |
783073 |
ttcttctttacacgtacagattaccatatttagttgctaatgttagaacatttcccgtagtaatagtaacttacttattgagcattgttgcatatcgatg |
783172 |
T |
|
| Q |
101 |
ttggagcttaattcatttggtggcaggtttcatatgggatattagagaaagtgtcacctgtgacacactcagtcggaaattgtgttaagcgtgtcgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
783173 |
ttggagcttaattcatttggtggcaggtttcatatgggatattagagaaagtgtcacctgtgacacactcagtcggaaattgcgttaagcgtgtcgttgt |
783272 |
T |
|
| Q |
201 |
catcgtctcttctgttatcttcttccaaactcctgtctcacctatcaatgcccttggtaagtctctctaatggtccacatattttcaagtacttgcaaat |
300 |
Q |
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| T |
783273 |
catcgtctcttctgttatcttcttccaaactcctgtctcacctatcaatgcccttggtaagtctctctaatggtccacatattttcaagtacttgcaaat |
783372 |
T |
|
| Q |
301 |
ttttggtgtcttcgaagtcacaaaaattgctacaacttatgggaccatttactatccatatttcttcttttaattttcacgtcaaccaataaacatgata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
783373 |
ttttggtgtcttcgaagtcacaaaaattgctacaacttatgggaccatttactatccatatttcttcttttaattttcacgtcaaccaataaacatgata |
783472 |
T |
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| Q |
401 |
gaatatatattcgatattttctcgccattttcatttacttttttgtggtgctaatt |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
783473 |
gaatatatattcgatattttctcgccattttcatttacttttttgtggtgctaatt |
783528 |
T |
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