View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15546_low_5 (Length: 419)
Name: NF15546_low_5
Description: NF15546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15546_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 27773078 - 27773450
Alignment:
| Q |
19 |
gttgaaatatataaaatcatagcctaagaatatcccgcgtgagtattttggcgtggttttgtgaccggatctaatgctccaaggagccgtatcataacga |
118 |
Q |
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| T |
27773078 |
gttgaaatatataaaatcatagcctaagaatatcctgcgtgagtattttggcgtggttttgtgaccggatctaatgctccaaggagccgtatcataacga |
27773177 |
T |
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| Q |
119 |
gaatctatcccccaagttattggtaaagagaacaagtgacacacctattgggaaaatagggtaatgcattttaaggtgcatgcataggcatgattctagc |
218 |
Q |
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| T |
27773178 |
gaatctatcccccaa-----------agagaacaagtgacacacctattaggaaaatagggtaatgcattttaaggtgcatgcataggcatgattctagc |
27773266 |
T |
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| Q |
219 |
agacttcttacgggagctgcaagtagcaactctgatagaagcttcagagctaaannnnnnnatggagtttagtccatgttgccttcttactgtagtttga |
318 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27773267 |
agacttcttatgggagctgcaagtagcaactctaatagaagcttcagagctaaaaaattttatggagtttagtccatgttgccttcttactgtagtttga |
27773366 |
T |
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| Q |
319 |
attcctgtgatttcatttcttacaggttttcaagagtgggacgcttttcttatcttccaaaggtgtgtttaactactctagttt |
402 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27773367 |
attcctgtgatttcatttcttacaggttttcaagtgtgggacgcttttcttatcttccaaaggtgtgtttaactactctagttt |
27773450 |
T |
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