View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15546_low_7 (Length: 313)
Name: NF15546_low_7
Description: NF15546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15546_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 43377855 - 43377567
Alignment:
| Q |
17 |
cacctttatgatcatgaccagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttaga |
116 |
Q |
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| T |
43377855 |
cacctttatgatcatgaccagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttaga |
43377756 |
T |
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| Q |
117 |
tgatgcaccaggatatagagacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttc |
216 |
Q |
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| T |
43377755 |
tgatgcaccaggatatagagacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattctatttgtttc |
43377656 |
T |
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| Q |
217 |
tttccaatacctccattgaacatgagaaaccttctttcaagtccaaccaaacctgttggactattcttatcttcatttggattcttctc |
305 |
Q |
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| T |
43377655 |
tttccaatacctccattgaacatgagaaaccttctttcaagtccaactaaacctgttggactattcttatcttcatttggattcttctc |
43377567 |
T |
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Back To:
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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 305
Target Start/End: Complemental strand, 34428800 - 34428556
Alignment:
| Q |
61 |
tatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaacaaaccacaactt |
160 |
Q |
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||||| ||||||||||| |||||||||||| ||||||||| | || |||| |||| ||||| ||||| ||||| || ||| || || || |||| |
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| T |
34428800 |
tatctgtgtatcaaattcatcacttcatcacaattccacagtagcgcctcctcggatgttgcacaaggatctagaggcagatggcatgtgacaaccactt |
34428701 |
T |
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| Q |
161 |
tttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattgaacatgagaaaccttctttcaagtcc |
260 |
Q |
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| T |
34428700 |
tctgtttcaatttggttgcatcctggagaataccatccaaccattccatctgttcctttccaacacctccgttaaacataagaaaccttctttcaagccc |
34428601 |
T |
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| Q |
261 |
aaccaaacctgttggactattcttatcttcatttggattcttctc |
305 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
34428600 |
ctttaaattatttggactattcttatcttcatttggattcttctc |
34428556 |
T |
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