View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15547_low_1 (Length: 483)

Name: NF15547_low_1
Description: NF15547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15547_low_1
NF15547_low_1
[»] chr4 (5 HSPs)
chr4 (13-468)||(4404853-4405321)
chr4 (275-336)||(10209176-10209239)
chr4 (289-339)||(30853480-30853532)
chr4 (307-336)||(33225946-33225975)
chr4 (275-336)||(35555729-35555789)
[»] chr3 (5 HSPs)
chr3 (272-464)||(11581455-11581650)
chr3 (265-336)||(27893229-27893302)
chr3 (290-333)||(44133938-44133983)
chr3 (307-335)||(21427695-21427723)
chr3 (307-343)||(36820090-36820126)
[»] chr8 (3 HSPs)
chr8 (306-339)||(24399901-24399934)
chr8 (289-336)||(4011223-4011272)
chr8 (275-336)||(16351518-16351580)
[»] chr6 (1 HSPs)
chr6 (275-365)||(10617313-10617405)
[»] chr7 (3 HSPs)
chr7 (305-365)||(14593871-14593931)
chr7 (307-336)||(44401238-44401267)
chr7 (305-365)||(16013394-16013454)
[»] chr5 (2 HSPs)
chr5 (275-364)||(33667547-33667638)
chr5 (267-362)||(17213188-17213285)
[»] chr1 (3 HSPs)
chr1 (306-365)||(10272369-10272428)
chr1 (275-417)||(50771635-50771779)
chr1 (308-365)||(51584855-51584912)
[»] chr2 (2 HSPs)
chr2 (308-417)||(26850294-26850403)
chr2 (307-339)||(18188889-18188921)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 468
Target Start/End: Original strand, 4404853 - 4405321
Alignment:
Q  13 aatatcattccatgtgagaaatcccatgtggccaagcgaagttacctagtaccgaaggaaaagatggagaagaagccacgaaggtaatgcacccatcagt 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4404853 aatatcattccatgtgaggaatcccatgtggccaagcgaagttacctagtaccgaaggaaaagatggagaagaagccacgaaggtaatgcccccatcagt 4404952  T
Q  113 tctatcatatttgtaagttgttgcattaatggtgaacactgaacactctcatgttttggagtgttgctaactgcagagtatct----aataatttaatga 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  4404953 tctatcacatttgtaagttgttgcattaatggtgaacactgaacactctcatgttttggagtgttgctaactgcagagtatctaataaataatttaatga 4405052  T
Q  209 t---acaacaactaagttttatttcattaagtagagtccactatataaatcgaacggcgtt------------tcaataatcatgtctttctcatactca 293  Q
    |   |||||||| ||||||||||||||||||||||||   |||||||||||||||||||||            |||||||||||||||||||||||||||    
T  4405053 tacaacaacaaccaagttttatttcattaagtagagtttgctatataaatcgaacggcgttataatgtttttatcaataatcatgtctttctcatactca 4405152  T
Q  294 ttaatcttta-gtcttcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgactattctccctaagatatattctccttat 392  Q
    |||| || || |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |||||||||||||       
T  4405153 ttaacctctaggtcttcttaatagtttctcttataatttttttaagtactctcctacatatagtgatttgactattctccctacgatatattctcct--- 4405249  T
Q  393 tacataattcataggtcttctctctgtttgaccaaactctctaagtctagtttttaccatttttctattgtatatg 468  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4405250 ----taattcataggtcttctctctgtttgaccaaactctctaagtctagtttttaccatttttcaattgtatatg 4405321  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 10209239 - 10209176
Alignment:
Q  275 catgtctttctcatactcattaatctttagt--cttcttaatagtttctcttataatttttcta 336  Q
    ||||||||||||  |||||||||||| |||   |||||||||||||||||||||| ||||||||    
T  10209239 catgtctttctccaactcattaatctctagatccttcttaatagtttctcttatagtttttcta 10209176  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 30853532 - 30853480
Alignment:
Q  289 actcattaatctttag--tcttcttaatagtttctcttataatttttctaagt 339  Q
    ||||||||||||||||  | ||| ||||||||||||||||| |||||||||||    
T  30853532 actcattaatctttagatttttcataatagtttctcttatagtttttctaagt 30853480  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 33225946 - 33225975
Alignment:
Q  307 ttcttaatagtttctcttataatttttcta 336  Q
    ||||||||||||||||||||||||||||||    
T  33225946 ttcttaatagtttctcttataatttttcta 33225975  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 35555729 - 35555789
Alignment:
Q  275 catgtctttctcatactcattaatctttagtcttcttaatagtttctcttataatttttcta 336  Q
    ||||||||||||  ||||||| |||| ||| || ||||||||||||||||||| ||||||||    
T  35555729 catgtctttctccaactcatttatctctagact-cttaatagtttctcttatagtttttcta 35555789  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 464
Target Start/End: Complemental strand, 11581650 - 11581455
Alignment:
Q  272 aatcatgtctttctcatactcattaatctttag-tctt-cttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgactattc 369  Q
    ||||||||||||||   ||||||| |||| ||| |||| ||||||||||||||||||| |||||||| || || || ||| | |||||||||||||   |    
T  11581650 aatcatgtctttcttcaactcatttatctatagatctttcttaatagtttctcttatagtttttctaggtcttctcatacctctagtgatttgactcacc 11581551  T
Q  370 tccctaagatatattctccttattacataattcataggtcttctctctgtttgaccaaactctctaagtctagtttttaccat-ttttctattgta 464  Q
    | | |  ||| || ||| |||| ||||||||||| | |||||||||||   |  ||||||   ||||||||||||| |||||| ||||||||||||    
T  11581550 tacatctgatgtactcttcttactacataattcacatgtcttctctctacatacccaaaccacctaagtctagtttctaccatcttttctattgta 11581455  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 27893302 - 27893229
Alignment:
Q  265 tttcaataatcatgtctttctcatactcattaatctttag--tcttcttaatagtttctcttataatttttcta 336  Q
    |||||| |||||||||||||||  |||||||||||| |||   ||| |||||||||||||||||| | ||||||    
T  27893302 tttcaaaaatcatgtctttctccaactcattaatctctaggtcctttttaatagtttctcttatagtctttcta 27893229  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 44133938 - 44133983
Alignment:
Q  290 ctcattaatctttag-tct-tcttaatagtttctcttataattttt 333  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  44133938 ctcattaatctttagatctatcttaatagtttctcttataattttt 44133983  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 21427695 - 21427723
Alignment:
Q  307 ttcttaatagtttctcttataatttttct 335  Q
    |||||||||||||||||||||||||||||    
T  21427695 ttcttaatagtttctcttataatttttct 21427723  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 36820090 - 36820126
Alignment:
Q  307 ttcttaatagtttctcttataatttttctaagtattt 343  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  36820090 ttcttaatagtttctcttatagtttttctaggtattt 36820126  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 24399901 - 24399934
Alignment:
Q  306 cttcttaatagtttctcttataatttttctaagt 339  Q
    ||||||||||||||||||||||||||||||||||    
T  24399901 cttcttaatagtttctcttataatttttctaagt 24399934  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 4011272 - 4011223
Alignment:
Q  289 actcattaatctttag-tctt-cttaatagtttctcttataatttttcta 336  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  4011272 actcattaatctttagatctttcttaatagtttctcttatagtttttcta 4011223  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 16351580 - 16351518
Alignment:
Q  275 catgtctttctcatactcattaatctttagt--cttcttaatagtttctcttataatttttcta 336  Q
    ||||||||||||| |||||||||||| |||   |||||||||||||||||| ||| ||||||||    
T  16351580 catgtctttctca-actcattaatctctagatccttcttaatagtttctctaatagtttttcta 16351518  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 365
Target Start/End: Original strand, 10617313 - 10617405
Alignment:
Q  275 catgtctttctcatactcattaatctttagt--cttcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgact 365  Q
    ||||||||||||  |||||||||||| |||   ||||||||| |||||||||||| |||||||| || || | |||| | |||||||||||||    
T  10617313 catgtctttctccaactcattaatctctagatccttcttaatggtttctcttatagtttttctaggttttcttctacctctagtgatttgact 10617405  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 14593931 - 14593871
Alignment:
Q  305 tcttcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgact 365  Q
    ||||||||||||||||||||||| |||||||| || ||  ||||| | |||||||||||||    
T  14593931 tcttcttaatagtttctcttatagtttttctaggtcttcccctacctctagtgatttgact 14593871  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 44401238 - 44401267
Alignment:
Q  307 ttcttaatagtttctcttataatttttcta 336  Q
    ||||||||||||||||||||||||||||||    
T  44401238 ttcttaatagtttctcttataatttttcta 44401267  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 16013454 - 16013394
Alignment:
Q  305 tcttcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgact 365  Q
    ||||||||||||||||||||||| |||||||| || ||  ||||| | | |||||||||||    
T  16013454 tcttcttaatagtttctcttatagtttttctaggtcttcccctacctctggtgatttgact 16013394  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 364
Target Start/End: Complemental strand, 33667638 - 33667547
Alignment:
Q  275 catgtctttctcatactcattaatctttagt--cttcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgac 364  Q
    ||||||||||||  |||||||||||| |||   ||||||||||  |||||||||| |||||||| || ||  ||||||| ||||||||||||    
T  33667638 catgtctttctccaactcattaatctctagatccttcttaataacttctcttatagtttttctaggtcttcccctacatctagtgatttgac 33667547  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 17213285 - 17213188
Alignment:
Q  267 tcaataatcatgtctttctcatactcattaatctttagt--cttcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttg 362  Q
    |||| ||| |||||||||||  |||||||||||| |||   ||| |||||||||| |||| || ||||||||||| || ||| |||| ||||||||||    
T  17213285 tcaaaaattatgtctttctctaactcattaatctctagatccttgttaatagtttttcttctagtttttctaagttttctcccacatctagtgatttg 17213188  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 10272428 - 10272369
Alignment:
Q  306 cttcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgact 365  Q
    ||||||||||||||||||||||| ||||||| || ||  ||||| | |||||||||||||    
T  10272428 cttcttaatagtttctcttataagttttctaggtcttcccctacctctagtgatttgact 10272369  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 417
Target Start/End: Original strand, 50771635 - 50771779
Alignment:
Q  275 catgtctttctcatactcattaatctttagt--cttcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgactattctcc 372  Q
    ||||||||||||  ||| |||||||| |||   ||||||||||||||| |||||| |||||||| || ||  ||||| | |||| ||||||||   ||||    
T  50771635 catgtctttctccaacttattaatctctaggtccttcttaatagtttcgcttatagtttttctaggtcttcccctacctctagtcatttgactcccctcc 50771734  T
Q  373 ctaagatatattctccttattacataattcataggtcttctctct 417  Q
     |  ||| || |||||||| |||| ||| ||| ||||||||||||    
T  50771735 atctgatctactctccttactacaaaatccatgggtcttctctct 50771779  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 51584912 - 51584855
Alignment:
Q  308 tcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgact 365  Q
    |||||||||||||||||||| |||||||| || ||  ||||| | |||||||||||||    
T  51584912 tcttaatagtttctcttatagtttttctaggtcttcccctacctctagtgatttgact 51584855  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 417
Target Start/End: Complemental strand, 26850403 - 26850294
Alignment:
Q  308 tcttaatagtttctcttataatttttctaagtattttcctacatatagtgatttgactattctccctaagatatattctccttattacataattcatagg 407  Q
    ||||||||  ||||||||||  ||||||| || |||  || | | ||||||||||||||| |||| |  ||| || |||||||| ||||||||  |||||    
T  26850403 tcttaataacttctcttatagattttctaggtttttctctgcctttagtgatttgactatcctccatctgatctagtctccttactacataatatatagg 26850304  T
Q  408 tcttctctct 417  Q
    ||||||||||    
T  26850303 tcttctctct 26850294  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 18188921 - 18188889
Alignment:
Q  307 ttcttaatagtttctcttataatttttctaagt 339  Q
    |||| ||||||||||||||||||||||||||||    
T  18188921 ttctgaatagtttctcttataatttttctaagt 18188889  T

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