View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15547_low_2 (Length: 392)
Name: NF15547_low_2
Description: NF15547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15547_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 203 - 377
Target Start/End: Original strand, 22125693 - 22125888
Alignment:
| Q |
203 |
ttggtttatgttacccccatcaacgtaaagaacaatatattaataaattagtccaaggttatcaa---------------------aaatacaatcaacc |
281 |
Q |
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| T |
22125693 |
ttggtttatgttacccccatcaacgtaaagaacaatatattaataaattagtccaaggttatcaaaaataatagataatcattcaaaaatacaatcaacc |
22125792 |
T |
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| Q |
282 |
aaattgataagtgcttgataccctcgactacttgattcatattcacctcttgatgttgatcaaatgacagtgaaccaaattgagttaagtcccttt |
377 |
Q |
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| T |
22125793 |
aaattgataagtgcttgataccctcgactacttgattcatattcaactcttgatgttgatcaaatgacagtcaaccaaattgagttaagtcccttt |
22125888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 22125518 - 22125636
Alignment:
| Q |
28 |
gggataacatccttttacacaaatggagtgaaacaggagtagagttataaaataaaacaactattagcttcaaatgtattttacaaaatgattactataa |
127 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22125518 |
gggataacatccatttacacaaatggagtgaaacaggagtagagttataaaataaaacaactattagcttcaaatgtattttacaaaatgattaatataa |
22125617 |
T |
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| Q |
128 |
ttgaagaaactatagctcc |
146 |
Q |
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| T |
22125618 |
ttgaagaaactatagctcc |
22125636 |
T |
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