View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15547_low_4 (Length: 256)
Name: NF15547_low_4
Description: NF15547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15547_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 51310385 - 51310131
Alignment:
| Q |
1 |
catcaacaactctgttcaaatcattaaacaaacccaatcttccatatccatacaaaatagacttgaattcaaaagcagaaggttgaagctgaatcttccc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51310385 |
catcaacaactctgttcaa-tcattaaacaaacccaatattccatatccatacaaaatagacttgaattcaaaagcagaaggttgaagctgaatcttccc |
51310287 |
T |
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| Q |
101 |
accaccatctgttcgtttaaattcctgaaccaaattctcagcctcacgaggcttatccattgcacacaaaccactaaccatagattcagaagctctgcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51310286 |
accaccatctgttcgtttaaattcctgaaccagattctcagcctcacgaggcttatccattgcacacaaaccactaaccatagattcagaagctctgcgt |
51310187 |
T |
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| Q |
201 |
ttaacgtaaattgaagaggaagtgcgaagaagattgttgaggtgagaataagcgaa |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51310186 |
ttaacgtaaattgaagaggaagtgcgaagaagattgttgaggtgagaataagcgaa |
51310131 |
T |
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