View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15548_low_1 (Length: 376)
Name: NF15548_low_1
Description: NF15548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15548_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 4 - 357
Target Start/End: Complemental strand, 6905861 - 6905516
Alignment:
| Q |
4 |
gaaaaagagacgcaagaggcatgacacacacaacagagggagaaggagagggagaggctggtcaaatnnnnnnnctgtccccaaacctatctctctcttc |
103 |
Q |
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| T |
6905861 |
gaaaaagagacgcaagaggcaagacacacacaacagaggaagagagagaggggggg------caaataaaaaaactgtccccaaaccaatctctctcttc |
6905768 |
T |
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| Q |
104 |
cttctcaaaagaaaataactgcaattttattaacttttttcggatctgccatgcaagcgcacctgacatggcaaagatccattcacaaatatcacacaaa |
203 |
Q |
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| T |
6905767 |
cctctcaaaacaaaataactgcaattttattaacttttttcggatctgccatgcaagcgcacctgacatggcaaagatccattcacaaatatcacacaaa |
6905668 |
T |
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| Q |
204 |
ctcaacaactaccttctctctctatcaaccaaaaatttctgaattcgaaagcgatacaaaacataatcacttcctaaagaataattgttacnnnnnnnnn |
303 |
Q |
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| T |
6905667 |
ctcaacaactaccttctctctctatcaaccaaaaatttctgaattcgaaagcgatacaaaacataatcacttactaaagaataattgttac--aaaaaaa |
6905570 |
T |
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| Q |
304 |
ctcaactaattttgtgttaattgctttgattcaacgcaaatctcgcatccgtat |
357 |
Q |
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| T |
6905569 |
ctcaactaattttgtgttaattgctttgattcaacgcaaatctcgcatccgtat |
6905516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 6924434 - 6924316
Alignment:
| Q |
81 |
tccccaaacctatctctctcttccttctcaaaagaaaataactgcaattttattaacttttttcggatctgccatgcaagcgcacctgacatggcaaaga |
180 |
Q |
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| T |
6924434 |
tccccaaacctatctctctcttccctctcaaaacaaaataactgcaattttattaagctttttcggatctgccaagcaagcgcacctgacatggcaaaga |
6924335 |
T |
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| Q |
181 |
tccattcacaaatatcaca |
199 |
Q |
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| T |
6924334 |
tccattcacaaatctcaca |
6924316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 6926599 - 6926519
Alignment:
| Q |
106 |
tctcaaaagaaaataactgcaattttattaacttttttcggatctgccatgcaagcgcacctgacatggcaaagatccatt |
186 |
Q |
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| T |
6926599 |
tctcaaaacaaaataactgtaacttcattaagatttttcggacctgccatgcaagcgcacctgacatggcaaagatccatt |
6926519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 6927843 - 6927739
Alignment:
| Q |
79 |
tgtccccaaacctatctctctcttccttctcaaaagaaaataactgcaattttattaacttttttcggatctgccatgcaagcgcacctgacatggcaaa |
178 |
Q |
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|||| ||||||||||||||| || | |||||||| ||||||||| ||||||||||| | |||| || ||| |||||||||||||||||||||||||| |
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| T |
6927843 |
tgtctccaaacctatctctccctcacctctcaaaacaaaataactataattttattaagatatttcagacctggcatgcaagcgcacctgacatggcaaa |
6927744 |
T |
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| Q |
179 |
gatcc |
183 |
Q |
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||||| |
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| T |
6927743 |
gatcc |
6927739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 6907472 - 6907394
Alignment:
| Q |
106 |
tctcaaaagaaaataactgcaattttattaacttttttcggatctgccatgcaagcgcacctgacatggcaaagatccatt |
186 |
Q |
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|||||||| |||||||||| || || ||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
6907472 |
tctcaaaacaaaataactgtaacttcattaa--tttttcggacctgccatgcaagcgcacctgacatagcaaagatccatt |
6907394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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