View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15549_high_1 (Length: 556)

Name: NF15549_high_1
Description: NF15549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15549_high_1
NF15549_high_1
[»] chr5 (4 HSPs)
chr5 (238-556)||(28385206-28385524)
chr5 (242-556)||(12540557-12540871)
chr5 (9-193)||(28385569-28385753)
chr5 (9-193)||(12540920-12541104)
[»] chr7 (2 HSPs)
chr7 (242-554)||(3417520-3417832)
chr7 (18-190)||(3417296-3417468)
[»] chr2 (6 HSPs)
chr2 (244-555)||(13448236-13448547)
chr2 (242-555)||(13440073-13440386)
chr2 (242-555)||(13454707-13455020)
chr2 (9-193)||(13440435-13440619)
chr2 (11-193)||(13448598-13448780)
chr2 (43-191)||(13455071-13455219)
[»] chr4 (7 HSPs)
chr4 (242-413)||(48958159-48958333)
chr4 (247-498)||(48965259-48965510)
chr4 (78-193)||(48958382-48958497)
chr4 (78-193)||(48912171-48912286)
chr4 (114-188)||(48974349-48974423)
chr4 (242-368)||(48961353-48961482)
chr4 (124-170)||(48965587-48965633)
[»] chr6 (3 HSPs)
chr6 (9-191)||(12589926-12590108)
chr6 (10-193)||(12483222-12483405)
chr6 (242-338)||(12483454-12483556)
[»] scaffold0536 (1 HSPs)
scaffold0536 (78-193)||(6337-6452)
[»] chr8 (1 HSPs)
chr8 (116-193)||(12641345-12641422)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 238 - 556
Target Start/End: Complemental strand, 28385524 - 28385206
Alignment:
Q  238 tggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgg 337  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385524 tggctgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgg 28385425  T
Q  338 ggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaa 437  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385424 ggggatttctgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaa 28385325  T
Q  438 tgagaaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccaga 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28385324 tgagaaattgataacaacagtccgaagaattggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcaga 28385225  T
Q  538 gataacatagagaaggcta 556  Q
    |||||||||||||||||||    
T  28385224 gataacatagagaaggcta 28385206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 242 - 556
Target Start/End: Complemental strand, 12540871 - 12540557
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 341  Q
    |||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  12540871 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 12540772  T
Q  342 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 441  Q
    |||| |||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||   ||| |||    
T  12540771 atttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgag 12540672  T
Q  442 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 541  Q
    ||| | ||||||   |||||| |||||||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||||   |||||||     
T  12540671 aaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatg 12540572  T
Q  542 acatagagaaggcta 556  Q
     ||||||||||||||    
T  12540571 gcatagagaaggcta 12540557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 28385753 - 28385569
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28385753 agcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagc 28385654  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  28385653 ataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctg 28385569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 12541104 - 12540920
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    ||||| || |||||| ||| ||| || |||||||||||||| ||| | ||||||||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  12541104 agcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagc 12541005  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    ||||| ||||||| ||| |||||||||||||||||||| || ||| |||||| |   ||||||||||||||||||||||||||||    
T  12541004 ataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcctg 12540920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 242 - 554
Target Start/End: Original strand, 3417520 - 3417832
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 341  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||| |||| |||||||||| |||||||||| |||||    
T  3417520 tgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtaggggg 3417619  T
Q  342 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 441  Q
    |||| |||||||||| |||||||||||| |||| || |||||||| || |||||||||||||||||||||||  |||||| |||||| ||   |||||||    
T  3417620 atttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgag 3417719  T
Q  442 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 541  Q
    ||| | ||||||  ||||||| |||||||||||||||||||||  || |||||| || || |||||| ||||||||||||||||||||||| |||||||     
T  3417720 aaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagcagagatg 3417819  T
Q  542 acatagagaaggc 554  Q
    |||||||||||||    
T  3417820 acatagagaaggc 3417832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 3417296 - 3417468
Alignment:
Q  18 gggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccat 117  Q
    |||||||||| ||| || ||| ||||| |||||||||   |||||||| ||||| | ||||||||||||  ||||| |||||||||||||| ||||| ||    
T  3417296 gggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactat 3417395  T
Q  118 ttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttc 190  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  3417396 ttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttc 3417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 244 - 555
Target Start/End: Complemental strand, 13448547 - 13448236
Alignment:
Q  244 ccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggat 343  Q
    |||||||||||||| |||||||| || || ||||||||||| || || ||||||||||||||||| |||  |||||||||| ||||||| ||||||||||    
T  13448547 ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggat 13448448  T
Q  344 ttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaa 443  Q
    || |||| |||||||||||||||||||  ||||| |||||| | ||||||||||||||||||||||||||   ||||| |||||| |||  |||||||||    
T  13448447 ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaa 13448348  T
Q  444 attgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagataac 543  Q
    | ||||||||  | ||||| |||||||||| ||||| ||||  || ||||||||||| | ||||   | ||||||||||||||| |||| |||||||| |    
T  13448347 actgataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagcagagatagc 13448248  T
Q  544 atagagaaggct 555  Q
    ||||||||||||    
T  13448247 atagagaaggct 13448236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 242 - 555
Target Start/End: Complemental strand, 13440386 - 13440073
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 341  Q
    |||| |||||||| || |||||||||||| | | || |||||| || || | |||||||||||||||||||  |||||||||| ||||||||||||||||    
T  13440386 tgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgggggg 13440287  T
Q  342 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 441  Q
    |||| |||| ||||||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||   ||||| |||||| |||  ||| |||    
T  13440286 atttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgag 13440187  T
Q  442 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 541  Q
    ||| || |||||  | | ||| |||||||||||||||| ||||  |||||||||||||  ||||||  || ||||||| |||||||||||| ||| ||||    
T  13440186 aaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagggata 13440087  T
Q  542 acatagagaaggct 555  Q
    ||||||||||||||    
T  13440086 acatagagaaggct 13440073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 242 - 555
Target Start/End: Complemental strand, 13455020 - 13454707
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 341  Q
    |||||||||||||||| |||| |||||| |  || |||||||| || || |||||||||||||||||||||  |||||||||  ||||||| ||||||||    
T  13455020 tgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgggggg 13454921  T
Q  342 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 441  Q
    |||| |||| |||||||||||||||||||| ||||| |||||| ||  ||||||||||||||||||||||||    |||| |||||| |||  ||| |||    
T  13454920 atttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctacaacgag 13454821  T
Q  442 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 541  Q
    ||| | ||||||  ||| ||| |||||||| | ||||| ||||  || ||||||||||||| ||||  || ||||||| |||||||||||| || |||||    
T  13454820 aaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatggtgtacaagtggtgttgcggagagagagaagttggtgagcaaagata 13454721  T
Q  542 acatagagaaggct 555  Q
     |||||||||||||    
T  13454720 gcatagagaaggct 13454707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 13440619 - 13440435
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    |||||||| |||||| ||| ||||||||| |  |||||| ||| |||  |||||| | ||| ||  ||||||||| ||  ||||| ||||||||||||||    
T  13440619 agcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaagc 13440520  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13440519 atcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctg 13440435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 13448780 - 13448598
Alignment:
Q  11 cagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcat 110  Q
    |||||| |||||| ||| ||| |||||  | ||||||| ||||||  |||||| | ||| || |||||||||||||  ||||| ||||||||||||||||    
T  13448780 cagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 13448681  T
Q  111 aaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
     ||| |||| ||||||||||||||||| ||||| || || || ||||||||||| ||||||||||||||||||||||||||||    
T  13448680 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctg 13448598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 13455219 - 13455071
Alignment:
Q  43 cacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgaga 142  Q
    ||||||||||||| ||||||  | ||| || |||||||||||||  ||||| |||||||||||||||| ||  |||  ||| ||||||||||||||||||    
T  13455219 cacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcatcaattattcatctaataaacaactatatgaga 13455120  T
Q  143 ttgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 191  Q
    | || ||| || |||||||| ||||||| || |||||||||||||||||    
T  13455119 tggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttcc 13455071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 242 - 413
Target Start/End: Complemental strand, 48958333 - 48958159
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaagaag---ggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggg 338  Q
    ||||||| ||||| || |||||||||||||||||||||   ||||| || || ||||| ||||||||||||||| ||||  ||||| ||  ||| |||||    
T  48958333 tgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtggg 48958234  T
Q  339 gggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggcc 413  Q
     | |||| |||||||||||||| ||||||| | ||| || |||||| ||||||| ||||||||||| ||||||||    
T  48958233 tgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggcc 48958159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 498
Target Start/End: Complemental strand, 48965510 - 48965259
Alignment:
Q  247 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc 346  Q
    |||||||| || |||||||||||||||||||||||||| || || ||||||||||| || || ||||||||  ||||| |||| || ||||| |  |||     
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  347 tgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaatt 446  Q
    |||| ||||| ||  ||||||| |  || || |||||||| ||||| ||||| ||||| || |||||||  |||| ||| || |||  ||| || ||| |    
T  48965410 tgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaact 48965311  T
Q  447 gataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgt 498  Q
    |||||||  ||| ||| | |||||||||||||| ||||  || |||||||||    
T  48965310 gataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgt 48965259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 48958497 - 48958382
Alignment:
Q  78 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 177  Q
    |||||||||  ||||| |||| ||||||||||||    |||| |||||||||||||| |||||||||||||| |  ||||||||||||||||||  |||     
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaattt 48958398  T
Q  178 atatgggttgttcctg 193  Q
     |||||||||||||||    
T  48958397 gtatgggttgttcctg 48958382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 48912171 - 48912286
Alignment:
Q  78 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 177  Q
    |||||| || |||||| |||| |||||||||  |   ||||| || ||||||||||| ||||||||||||||||  || ||||||||  |||||  ||||    
T  48912171 taactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 48912270  T
Q  178 atatgggttgttcctg 193  Q
    ||||||||||||||||    
T  48912271 atatgggttgttcctg 48912286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 48974423 - 48974349
Alignment:
Q  114 ccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgt 188  Q
    ||||||| || |||| ||| | |||||||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  48974423 ccatttcactaataagcaattgtatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgt 48974349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 368
Target Start/End: Complemental strand, 48961482 - 48961353
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattgga---aagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggg 338  Q
    ||||||| |||||||| ||||||||||||| |   ||||||||||| || || | ||| ||||||||||||||| ||||  || || || | ||||||||    
T  48961482 tgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtggg 48961383  T
Q  339 gggatttctgacacattgcggggggaactc 368  Q
     |  ||| |||| ||||||||| |||||||    
T  48961382 tgtgtttatgacgcattgcgggtggaactc 48961353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 48965633 - 48965587
Alignment:
Q  124 gataaacaactatatgagattgcgtgcgcaatagaagcatcaggtca 170  Q
    |||||||| || |||||||||||||| |||||||||||||| |||||    
T  48965633 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtca 48965587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 12589926 - 12590108
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    |||||| | |||||| ||||||| ||||| || ||| ||||| ||||  ||||| || ||  |||||| |||||| ||  ||||| |||| ||||| |||    
T  12589926 agcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagc 12590025  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 191  Q
    |||  | ||||||| ||||||||||| ||||||||| |||| |  |||||||||||||| |||  |||| |||||||| ||||    
T  12590026 atatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 12483222 - 12483405
Alignment:
Q  10 gcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagca 109  Q
    ||||||| |||||||||||||| |||||||| ||| ||||| |  |  ||||| || ||| ||| ||  || |||||  ||||| |||| ||||| |||     
T  12483222 gcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcc 12483321  T
Q  110 taaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    ||  | |||||||||||||||| || || || ||| | |||| |||||||||||| ||| |   ||||||||||||||||||||    
T  12483322 tatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctg 12483405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 338
Target Start/End: Original strand, 12483454 - 12483556
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattgga------aagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggt 335  Q
    ||||||||||||||||||||||||||||| ||      |||| |||||| || |||||||| ||||| ||||| || ||||| |||||| ||||||| ||    
T  12483454 tgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagt 12483553  T
Q  336 ggg 338  Q
    |||    
T  12483554 ggg 12483556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 6337 - 6452
Alignment:
Q  78 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 177  Q
    |||||||||  ||||| |||| ||||||||| ||  || |||| | ||||||||||| || |||||||| || |  ||||||||||| ||||||  ||||    
T  6337 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 6436  T
Q  178 atatgggttgttcctg 193  Q
    ||||||||||||||||    
T  6437 atatgggttgttcctg 6452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 12641345 - 12641422
Alignment:
Q  116 atttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    ||||||||||||||||||| || ||||||||| ||| |||||||   |||||||||  |||  |||||||||||||||    
T  12641345 atttctctgataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctg 12641422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University