View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15549_high_5 (Length: 369)
Name: NF15549_high_5
Description: NF15549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15549_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 5998535 - 5998871
Alignment:
| Q |
15 |
aagagtatgcttgtctgtatgatgaaaaatgaactttagaatctagtataactcataactgatgtcacttactgccgcatgaggaggcatggaacatttt |
114 |
Q |
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| T |
5998535 |
aagagtatgcttgtctgtatgatgaaaaatgaactttagaatctagtataactcataactgatgtcacttactgccgcaggaggaggcatggaacatttt |
5998634 |
T |
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| Q |
115 |
tccactaatcgcaaacaaagctggaaactcgcgtgctgtgaagcatcatgagttattgactaacaaccacgagaagcttttgaaggaagattgggagctt |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5998635 |
tccactaatcgcaaacaaagatggaaactcgcgtgctgtgaagcatcatgagttattgactaacaaccacgagaagctttcgaaggaagattgggagctt |
5998734 |
T |
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| Q |
215 |
caaagaaggacgatatttacagatttggaggtggcaactacgtttatgagcatcgcattttatctcgctttcagcatgcgtaaagaagcaccttctttcc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5998735 |
caaagaaggacgatatttacagatttggaggtggcaactacgtttatgagcatcgcattttatctcgctttcagcatgcgtaaagaagcaccttctttcc |
5998834 |
T |
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| Q |
315 |
ttatggtgacccttgtgctcgcatgcatcacatcgtt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
5998835 |
ttatggtgacccttgtgctcgcatgcatcacatcgtt |
5998871 |
T |
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