View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15549_high_6 (Length: 353)
Name: NF15549_high_6
Description: NF15549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15549_high_6 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 2830900 - 2831228
Alignment:
| Q |
9 |
gagatgaacactcatattggatgtttaactgttcctgcagatggctttgctctagcttatgtacaagcttgtggttttcctgttttaatatctcatagtc |
108 |
Q |
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| T |
2830900 |
gagatgaacactcatattggatgtttaactgttcctgcagttggctttgctctagcttatgtacaagcttgtggttttcctgttttaatatctcatagtc |
2830999 |
T |
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| Q |
109 |
tagtgcaatctgctctatttgcatctctaactcctctttgtccctcctatacatttcaatttcaccatacaagtctataannnnnnnctcaagcaagtgt |
208 |
Q |
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| T |
2831000 |
tagtgcaatctgctctatttgcatctctaactcctctttgtccctcctatacatttcaatttcaccatacaagtctataatttttttctcaagcaagtgt |
2831099 |
T |
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| Q |
209 |
gtctccttggcatcacttttctccttgacaagatcatccaatgctttttgatcttcatcatcacttgtttcacattgtgagagtttcatctctaactctt |
308 |
Q |
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| T |
2831100 |
gtctccttggcatcacttttctccttgacaagatcatccaatgctttttgatcttcatcatcacttgtttcacattgtgagagtttcatctctaactctt |
2831199 |
T |
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| Q |
309 |
gggaatttttattgtgttcctgtccattg |
337 |
Q |
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| T |
2831200 |
gggaatttttattgtgttcctgtccattg |
2831228 |
T |
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Back To:
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Target: scaffold0415 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 4168 - 4071
Alignment:
| Q |
80 |
tggttttcctgttttaatatctcatagtctagtgcaatctgctctatttgcatctctaactcctctttgtccctcctatacatttcaatttcaccata |
177 |
Q |
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| T |
4168 |
tggttttcctgtttcaaaatttcatagtccagtgcaagctgctccatctgcatctctaactcatctttgtctctcctatacatctctatttcaccata |
4071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 40799538 - 40799441
Alignment:
| Q |
80 |
tggttttcctgttttaatatctcatagtctagtgcaatctgctctatttgcatctctaactcctctttgtccctcctatacatttcaatttcaccata |
177 |
Q |
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|||||||||||||| || || |||||||| ||||||| |||||| || |||||||||||||| |||||||| ||||||||||| || ||||||||||| |
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| T |
40799538 |
tggttttcctgtttcaaaatttcatagtccagtgcaagctgctccatctgcatctctaactcatctttgtctctcctatacatctctatttcaccata |
40799441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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