View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15549_high_7 (Length: 338)
Name: NF15549_high_7
Description: NF15549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15549_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 51710981 - 51710670
Alignment:
| Q |
17 |
tctctttatcacactgccaccttttcccaaaatgcatccaacttgattagaaaggataagtagccgtaaaccaaagtaaccttttttactttcatcacca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51710981 |
tctctttatcacactgccaccttttcccaaaatgcatccaacttgattagaaaggataagtagccgtaaaccaaagtaaccttttttactttcatcacca |
51710882 |
T |
|
| Q |
117 |
acttcatcctcagccaccctctcaaaaactaacattacagccctcataatagttggatttgaattcaccttctcgctctgcgaatcttcaacagaaacag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51710881 |
ccttcatcctcagccaccctctcaaaaactaacattacagccctcataatagttggatttgaattcaccttctcgctctgcgaatcttcaacagaaacag |
51710782 |
T |
|
| Q |
217 |
aatctttatcttcattatcatcgccattccctttctcctcatcatccttccccttgctttcactctcatcattatcattaacctcctttccttgctcagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51710781 |
aatctttatcttcattatcatcgccattccctttctcctcatcatccttcaccttgctttcactctcatcattatcattaacctcctttccttgctcagc |
51710682 |
T |
|
| Q |
317 |
actaccttcttc |
328 |
Q |
| |
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|||||||||||| |
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| T |
51710681 |
actaccttcttc |
51710670 |
T |
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