View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15549_low_11 (Length: 257)
Name: NF15549_low_11
Description: NF15549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15549_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 12699550 - 12699776
Alignment:
| Q |
14 |
atgaacaacacaatcaattacctgagcaactgtgttatgatatttcttgccaaagcttaaggttactctgtttccgaaggcttcaaagagtggaagcaaa |
113 |
Q |
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| T |
12699550 |
atgaacaacacaatcaattacctgagcaactgtgttatgatatttcttgccaaagcttaaggttactgtgtttccaaaggcttcaaagagtggaagcaag |
12699649 |
T |
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| Q |
114 |
gctttgggaattttcgctctatagctcatgtaaaagatgaaacactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttg |
213 |
Q |
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| T |
12699650 |
gctttgggaattttcgctctatagctcatgtaaaagatgaaacactactagaaaatttacatttgacatcagggctttcacatcagtggagaaatacttg |
12699749 |
T |
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| Q |
214 |
aagggaaagaactttggagaaggtttt |
240 |
Q |
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| T |
12699750 |
aagggaaagaactttggagaaggtttt |
12699776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 51741416 - 51741484
Alignment:
| Q |
155 |
acactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaaga |
223 |
Q |
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| T |
51741416 |
acactactagaaaaaagacatttgacatcagggttttcacatcagtgcaaaaatacatgagggtaaaga |
51741484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 24167159 - 24167224
Alignment:
| Q |
156 |
cactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaa |
221 |
Q |
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| T |
24167159 |
cactactagaaaatatacatttaacaatagggatttcacatcagtggagaaatacatgaggggaaa |
24167224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 31713445 - 31713489
Alignment:
| Q |
156 |
cactactagaaaatttacatttgacatcagggcattcacatcagt |
200 |
Q |
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| T |
31713445 |
cactactagaaaatatacatttgacatcagggttttcacatcagt |
31713489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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