View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15549_low_4 (Length: 385)
Name: NF15549_low_4
Description: NF15549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15549_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 23696589 - 23696944
Alignment:
| Q |
15 |
acctgtggtgcatgcaaatgttgatactgaaactaacctcaaacctgttgaaggtgaatcttcttctcaattgaaaa-aatcctactgtgctatctgcat |
113 |
Q |
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| T |
23696589 |
acctgcggtgcatgcaaatgttgatactgaaactaacctcaaacctgttgaatgtgaatcttcttctcaattgaaaaaaatcctactgtgctatctgcat |
23696688 |
T |
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| Q |
114 |
ggaagctaaacctgttgaagatatgtttaaaaaccaaaactgttcacactctttctgtgaatattgtgttggaagttatctagctgcaaaaattcaagag |
213 |
Q |
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| T |
23696689 |
ggaagctaaacctgctgcagaaatgttcgaaaaccaaaactgttcacactctttctgtgaaggatgtgttggaagttatctagctgcaaaaattcaagag |
23696788 |
T |
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| Q |
214 |
aatatagcaatggtaaaatgtccttatccaaattgcaatggtatattggagcctcataattgtagcacccttataccaaaggatgtgtttgagatatggg |
313 |
Q |
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| T |
23696789 |
aatatagcaatggtaaaatgtccttatccaaattgcaatggtatattggagcctcataattgtagcacccttataccaaaggatgtgtttgagagatggg |
23696888 |
T |
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| Q |
314 |
gaaaggcactttgtgagaatatggtgttagattcacaaaaattttactgtcctttt |
369 |
Q |
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| T |
23696889 |
gaaaggcactttgtgagaatatggtgttagattcacaaaaattgtactgtcctttt |
23696944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 73 - 369
Target Start/End: Original strand, 23694517 - 23694813
Alignment:
| Q |
73 |
tcttcttctcaattgaaaaaatcctactgtgctatctgcatggaagctaaacctgttgaagatatgtttaaaaaccaaaactgttcacactctttctgtg |
172 |
Q |
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| T |
23694517 |
tcttcttctcagttgaaacaatcctactgtgctatttgtatggaagctaaacccgttgaagaaatgttccagaaccaaaaatgttcacattctttctgtg |
23694616 |
T |
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| Q |
173 |
aatattgtgttggaagttatctagctgcaaaaattcaagagaatatagcaatggtaaaatgtccttatccaaattgcaatggtatattggagcctcataa |
272 |
Q |
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| T |
23694617 |
aagattgtcttggaagatatctagctgcaaaaattcaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatga |
23694716 |
T |
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| Q |
273 |
ttgtagcacccttataccaaaggatgtgtttgagatatggggaaaggcactttgtgagaatatggtgttagattcacaaaaattttactgtcctttt |
369 |
Q |
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| T |
23694717 |
ttgtagttcaattttaccaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtcctttt |
23694813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 73 - 369
Target Start/End: Complemental strand, 23701286 - 23700988
Alignment:
| Q |
73 |
tcttcttctcaattgaaaaaatcctactgtgctatctgcatggaagctaaacctgttgaagatatgtttaaaaaccaaaactgttcacactctttctgtg |
172 |
Q |
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||||||||||| |||||| ||||||| |||| |||||| ||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |
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| T |
23701286 |
tcttcttctcagttgaaacaatcctattgtgatatctgtatggaagctaaacctgttgaagaaatgttccaaaaccgaaaatgttcacactctttctgtg |
23701187 |
T |
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| Q |
173 |
aatattgtgttggaagttatctagctgcaaaaatt--caagagaatatagcaatggtaaaatgtccttatccaaattgcaatggtatattggagcctcat |
270 |
Q |
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| T |
23701186 |
aatattgtgttggaagatatctagctgcaaaaattcacaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcat |
23701087 |
T |
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| Q |
271 |
aattgtagcacccttataccaaaggatgtgtttgagatatggggaaaggcactttgtgagaatatggtgttagattcacaaaaattttactgtcctttt |
369 |
Q |
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| T |
23701086 |
gattgttgttcaattttaccaaaggatgtgtttgatagatgggaaaattcactttgtgagaatatggtgttaggttcacagaaattttattgtcctttt |
23700988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 8149347 - 8149245
Alignment:
| Q |
150 |
aaactgttcacactctttctgtgaatattgtgttggaagttatctagctgcaaaaattcaagagaatatagcaatggtaaaatgtccttatccaaattgc |
249 |
Q |
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||||||||| ||||||||||||||| ||||||||| ||| | |||||||| |||||||||||||| | ||||| ||||||||||| ||||||||||| |
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| T |
8149347 |
aaactgttcgcactctttctgtgaagattgtgttgcaagatttctagctgtgaaaattcaagagaaaaaagcaacaataaaatgtcctgatccaaattgc |
8149248 |
T |
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| Q |
250 |
aat |
252 |
Q |
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||| |
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| T |
8149247 |
aat |
8149245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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