View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15549_low_8 (Length: 316)
Name: NF15549_low_8
Description: NF15549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15549_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 56469984 - 56470274
Alignment:
| Q |
9 |
aaatgaacagcaagaggtcaaaaatgatataatcatcacaagtattattttaaatatagggcctttcctgcaataaatatatataatcattcacacccgg |
108 |
Q |
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| T |
56469984 |
aaatgaacagcaagaggtcaaaaatgatataatcatcacaagtattattttaaatatagggcctttcctgcaataaatatataaaatcattc-cacccgg |
56470082 |
T |
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| Q |
109 |
gaatactacaatnnnnnnngaaaattcgaaatggggcggagggggaatgacatactcattaatgatgttgtaagtgcgaaggaccttatccacaagataa |
208 |
Q |
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| T |
56470083 |
gaatactacaataaaaaaagaaaattcgaaatggggcggagggggaatgacatactcattaatgatgttgtaagtgcgaaggaccttatccacaagataa |
56470182 |
T |
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| Q |
209 |
ttataaaggcttcccaagagacctccaataactccaagaaatataactactagtagatcaggtatgctgtatgcaggctttactgaattaac |
300 |
Q |
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| T |
56470183 |
ttataaaggcttcccaagagacctccaataactccaagaaatataactactagtagatcaggtatgctgtatgcaggctttactgaattaac |
56470274 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 154224 - 154102
Alignment:
| Q |
178 |
gtaagtgcgaaggaccttatccacaagataattataaaggcttcccaagagacctccaataactccaagaaatataactactagtagatcaggtatgctg |
277 |
Q |
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||||||||||||||| ||||| ||||||||||| |||| |||||||| |||||||||||| |||||||||||||||||| | || || |||||| || || |
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| T |
154224 |
gtaagtgcgaaggactttatcgacaagataattgtaaaagcttcccatgagacctccaatgactccaagaaatataactgcgaggaggtcaggtgtggtg |
154125 |
T |
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| Q |
278 |
tatgcaggctttactgaattaac |
300 |
Q |
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| T |
154124 |
taggcaggctttgcagaattaac |
154102 |
T |
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