View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15549_low_9 (Length: 288)
Name: NF15549_low_9
Description: NF15549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15549_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 41 - 247
Target Start/End: Original strand, 46762820 - 46763026
Alignment:
| Q |
41 |
tatgatacatttgcaaattgaaatatactgatatatttaattctttagagagaaaaatcaatgtgcagactacatgataaagcttggagctgcttctgat |
140 |
Q |
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| T |
46762820 |
tatgatacatttgcaaattgaaatgtactcatatatttacttctttagtgagggaaatcaatgtgcagactacatgataaagcttagagctgcttctgat |
46762919 |
T |
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| Q |
141 |
attgagcttcttcttcatgatttttccccgatggtcttgtaaatcttctaaatagcaatgccgatggcactttgttctttagggtgtagtttgcgtgttc |
240 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46762920 |
attgagcttcttcttcatgatttttccccaatggtcttgaaaatcttctaaatagcaatgccgatggcactttgttctttagggtgtagtttgcgtgttc |
46763019 |
T |
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| Q |
241 |
tttcttt |
247 |
Q |
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||||||| |
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| T |
46763020 |
tttcttt |
46763026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 38224681 - 38224783
Alignment:
| Q |
85 |
ttagagagaaaaatcaatgtgcagactacatgataaagcttggagctgcttctgatattgagcttcttcttcatgatttttcccc-gatggtcttgtaaa |
183 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||| |||| |||||| || |||||||| | ||||||||| || |
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| T |
38224681 |
ttagagagaaaaatcagtgtgcagacttaatggcaaagcttagagcttcttctgatattgatcttcctcttcacgagttttcccctgttggtcttgttaa |
38224780 |
T |
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| Q |
184 |
tct |
186 |
Q |
| |
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||| |
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| T |
38224781 |
tct |
38224783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 51303003 - 51302923
Alignment:
| Q |
82 |
tctttagagagaaaaatcaatgtgcagactacatgataaagcttggagctgcttctgatattgagcttcttcttcatgatt |
162 |
Q |
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| T |
51303003 |
tcttaagagaggagaatcaatgtgcagactatatgacaaagcttgaagcttcttatgatgttgagtttctgcttcatgatt |
51302923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 3276069 - 3276173
Alignment:
| Q |
84 |
tttagagagaaaaatcaatgtgcagactacatgataaagcttggagctgcttctgatattgagcttcttcttcatgatttttcc--ccgatggtcttgta |
181 |
Q |
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||||||||| | |||||||||||||| || ||| ||| ||||||||| |||||||| |||| ||||||||||||||||| || | |||||||||||| |
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| T |
3276069 |
tttagagaggagaatcaatgtgcagattatatggcaaaacttggagcttcttctgatgttgaacttcttcttcatgatttccccttctgatggtcttgta |
3276168 |
T |
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| Q |
182 |
aatct |
186 |
Q |
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||||| |
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| T |
3276169 |
aatct |
3276173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 18392567 - 18392457
Alignment:
| Q |
119 |
aaagcttggagctgcttctgatattgagcttcttcttcatgatttttcccc-gatggtcttgtaaatcttctaaatagcaatgccgatggcactttgttc |
217 |
Q |
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||||||||||| | |||||||| |||||||||||| ||||||||||| | || ||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
18392567 |
aaagcttggagtttcttctgatgttgagcttcttc---atgatttttcctttgttgatcttgtaaatcttttaaggagcaatgccgccggcactttgttc |
18392471 |
T |
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| Q |
218 |
tttagggtgtagtt |
231 |
Q |
| |
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||||| | |||||| |
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| T |
18392470 |
tttagagagtagtt |
18392457 |
T |
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