View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1554_high_1 (Length: 430)

Name: NF1554_high_1
Description: NF1554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1554_high_1
NF1554_high_1
[»] scaffold0083 (3 HSPs)
scaffold0083 (78-277)||(50805-51005)
scaffold0083 (308-413)||(50690-50795)
scaffold0083 (1-46)||(51003-51048)
[»] chr5 (5 HSPs)
chr5 (78-276)||(26793277-26793486)
chr5 (78-253)||(26818793-26818979)
chr5 (7-46)||(26793240-26793279)
chr5 (7-46)||(26818756-26818795)
chr5 (359-398)||(26793517-26793555)
[»] chr3 (33 HSPs)
chr3 (78-276)||(10214694-10214903)
chr3 (78-276)||(10223435-10223644)
chr3 (78-275)||(10103758-10103966)
chr3 (150-265)||(10123641-10123755)
chr3 (150-265)||(10180295-10180409)
chr3 (150-265)||(10256410-10256524)
chr3 (234-398)||(11768325-11768494)
chr3 (327-398)||(10076299-10076370)
chr3 (319-398)||(10031125-10031204)
chr3 (313-398)||(9838029-9838114)
chr3 (313-398)||(9848907-9848992)
chr3 (213-265)||(10028802-10028854)
chr3 (313-398)||(9837824-9837907)
chr3 (313-398)||(9848702-9848785)
chr3 (313-398)||(10126060-10126145)
chr3 (319-398)||(10657930-10658006)
chr3 (7-46)||(10076227-10076266)
chr3 (7-46)||(10103721-10103760)
chr3 (7-46)||(10214657-10214696)
chr3 (7-46)||(10223398-10223437)
chr3 (313-398)||(10662639-10662721)
chr3 (337-398)||(10104042-10104100)
chr3 (359-398)||(10214934-10214972)
chr3 (359-398)||(10223675-10223713)
chr3 (7-46)||(10439062-10439101)
chr3 (8-46)||(10018949-10018987)
chr3 (78-119)||(10018985-10019026)
chr3 (78-119)||(10180184-10180225)
chr3 (78-119)||(10256299-10256340)
chr3 (319-398)||(10516630-10516706)
chr3 (363-398)||(10123754-10123790)
chr3 (363-398)||(10256523-10256559)
chr3 (332-388)||(10259874-10259930)


Alignment Details
Target: scaffold0083 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 78 - 277
Target Start/End: Complemental strand, 51005 - 50805
Alignment:
Q  78 ttagtaaatgc-tatatttttcagcaatgatatgctcatcagtagaaaagttatcgacataatctctagtacattatttttaattttgaacacagatgat 176  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51005 ttagtaaatgcatatatttttcagcaatgatatgctcatcagtaaaaaagttatcaacataatctctagtacattatttttaattttgaacacagatgat 50906  T
Q  177 aagaaaaatgacaacatgatacatttattttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaaatatatataa 276  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  50905 aagaaaaatgacaacatgatacatttattttcgtatatgagaggagtttaactagaaattgcatatttgaatcactttccaaaagtaaaaatgtatataa 50806  T
Q  277 t 277  Q
    |    
T  50805 t 50805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 308 - 413
Target Start/End: Complemental strand, 50795 - 50690
Alignment:
Q  308 gtgactgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 407  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50795 gtgactgcaatttttcctttttctttgtatcaattattttgtgggatgtgggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 50696  T
Q  408 actgtt 413  Q
    ||||||    
T  50695 actgtt 50690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 51048 - 51003
Alignment:
Q  1 tagaaagtgtgttttgaaatatcatttatattcaaaccttcattta 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  51048 tagaaagtgtgttttgaaatatcatttacattcaaaccttcattta 51003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 78 - 276
Target Start/End: Original strand, 26793277 - 26793486
Alignment:
Q  78 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 167  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  26793277 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 26793376  T
Q  168 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 266  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||    
T  26793377 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaaa 26793476  T
Q  267 atatatataa 276  Q
    || |||||||    
T  26793477 atgtatataa 26793486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 78 - 253
Target Start/End: Original strand, 26818793 - 26818979
Alignment:
Q  78 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 167  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  26818793 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 26818892  T
Q  168 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcactt 253  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26818893 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactt 26818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 26793240 - 26793279
Alignment:
Q  7 gtgtgttttgaaatatcatttatattcaaaccttcattta 46  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  26793240 gtgtgttttgaaatatcatttacattcaaaccttcattta 26793279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 26818756 - 26818795
Alignment:
Q  7 gtgtgttttgaaatatcatttatattcaaaccttcattta 46  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  26818756 gtgtgttttgaaatatcatttacattcaaaccttcattta 26818795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 26793517 - 26793555
Alignment:
Q  359 gtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26793517 gtccaatattaac-actgctgagctttgctttccagcttt 26793555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 78 - 276
Target Start/End: Original strand, 10214694 - 10214903
Alignment:
Q  78 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 167  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  10214694 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 10214793  T
Q  168 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 266  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||    
T  10214794 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaaa 10214893  T
Q  267 atatatataa 276  Q
    || |||||||    
T  10214894 atgtatataa 10214903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 78 - 276
Target Start/End: Original strand, 10223435 - 10223644
Alignment:
Q  78 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 167  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  10223435 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 10223534  T
Q  168 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 266  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||    
T  10223535 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaaa 10223634  T
Q  267 atatatataa 276  Q
    || |||||||    
T  10223635 atgtatataa 10223644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 78 - 275
Target Start/End: Original strand, 10103758 - 10103966
Alignment:
Q  78 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 167  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  10103758 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 10103857  T
Q  168 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 266  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||||||    
T  10103858 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggaatttaactagaaattgcatatttgactcactttcctaaagtaaaa 10103957  T
Q  267 atatatata 275  Q
    || ||||||    
T  10103958 atgtatata 10103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 10123641 - 10123755
Alignment:
Q  150 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaat 248  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10123641 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaat 10123738  T
Q  249 cacttaccaaaagtaaa 265  Q
    ||||| || ||||||||    
T  10123739 cactttcctaaagtaaa 10123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 10180295 - 10180409
Alignment:
Q  150 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaat 248  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10180295 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaat 10180392  T
Q  249 cacttaccaaaagtaaa 265  Q
    ||||| || ||||||||    
T  10180393 cactttcctaaagtaaa 10180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 10256410 - 10256524
Alignment:
Q  150 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaat 248  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10256410 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacgtttatttttagtatatgagaggactttaacgagaaattgcatatttgaat 10256507  T
Q  249 cacttaccaaaagtaaa 265  Q
    ||||| || ||||||||    
T  10256508 cactttcctaaagtaaa 10256524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 234 - 398
Target Start/End: Original strand, 11768325 - 11768494
Alignment:
Q  234 attgcatatttgaatcacttaccaaaagtaaaaatatatataat-tatatgctatttaa-gattccgatggttttagtgac---tgcaatttttcctttt 328  Q
    |||||||||||||||||||| |||||||||||||| |||||||  ||| |||||||||| |||| |||||  |||| | |    ||||| ||||||||||    
T  11768325 attgcatatttgaatcactttccaaaagtaaaaatgtatataaagtatctgctatttaaagatttcgatgcctttaattaagtgtgcaacttttcctttt 11768424  T
Q  329 tcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    || ||||||||||||||||||  ||||| |||||||||||||||| || ||| ||||||||||| |||||    
T  11768425 tctttgtatcaattattttgtgggatgtaggtccaatattaaccaatggtgaactttgctttcccgcttt 11768494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 10076299 - 10076370
Alignment:
Q  327 tttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    |||| ||||||||||||||||||  ||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  10076299 tttccttgtatcaattattttgtgggatgtgggtccaatattaaccactactgagctttactttccagcttt 10076370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 10031125 - 10031204
Alignment:
Q  319 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || |||||||||||||||||||||    
T  10031125 tttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgagctttgctttccagcttt 10031204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 9838029 - 9838114
Alignment:
Q  313 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9838029 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 9848907 - 9848992
Alignment:
Q  313 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9848907 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9848992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 10028802 - 10028854
Alignment:
Q  213 atgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 265  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10028802 atgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 9837824 - 9837907
Alignment:
Q  313 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9837824 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9837907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 9848702 - 9848785
Alignment:
Q  313 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9848702 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9848785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 10126060 - 10126145
Alignment:
Q  313 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    ||||| |||| ||||| | |||||||||||||||||   ||||| ||||||||||||| || || ||| |||||||||||||||||    
T  10126060 tgcaactttttcttttgctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgacctttgctttccagcttt 10126145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 10657930 - 10658006
Alignment:
Q  319 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10657930 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---attaatcactgatgacctttgctttccagcttt 10658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 10076227 - 10076266
Alignment:
Q  7 gtgtgttttgaaatatcatttatattcaaaccttcattta 46  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10076227 gtgtgttttgaaatatcatttacattcaaaccttcattta 10076266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 10103721 - 10103760
Alignment:
Q  7 gtgtgttttgaaatatcatttatattcaaaccttcattta 46  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10103721 gtgtgttttgaaatatcatttacattcaaaccttcattta 10103760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 10214657 - 10214696
Alignment:
Q  7 gtgtgttttgaaatatcatttatattcaaaccttcattta 46  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10214657 gtgtgttttgaaatatcatttacattcaaaccttcattta 10214696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 10223398 - 10223437
Alignment:
Q  7 gtgtgttttgaaatatcatttatattcaaaccttcattta 46  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10223398 gtgtgttttgaaatatcatttacattcaaaccttcattta 10223437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 10662639 - 10662721
Alignment:
Q  313 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    ||||| |||||||||||| |||||| |||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10662639 tgcaacttttcctttttctttgtattaattattttgaaggatgtgggtcc---attaatcactgatgaactttgctttccagcttt 10662721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 10104042 - 10104100
Alignment:
Q  337 tcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    |||||||||||||  |||||  ||||||||||||| ||||||||||||||||||||||||||    
T  10104042 tcaattattttgtgggatgt--gtccaatattaac-actgctgagctttgctttccagcttt 10104100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 10214934 - 10214972
Alignment:
Q  359 gtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10214934 gtccaatattaac-actgctgagctttgctttccagcttt 10214972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 10223675 - 10223713
Alignment:
Q  359 gtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10223675 gtccaatattaac-actgctgagctttgctttccagcttt 10223713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 10439101 - 10439062
Alignment:
Q  7 gtgtgttttgaaatatcatttatattcaaaccttcattta 46  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  10439101 gtgtgttttgaaatatcatttacgttcaaaccttcattta 10439062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 10018949 - 10018987
Alignment:
Q  8 tgtgttttgaaatatcatttatattcaaaccttcattta 46  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  10018949 tgtgttttgaaatatcatttacgttcaaaccttcattta 10018987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 10018985 - 10019026
Alignment:
Q  78 ttagtaaatgctatatttttcagcaatgatatgctcatcagt 119  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10018985 ttagtaaatgctataattttcagtaatgatatactcatcagt 10019026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 10180184 - 10180225
Alignment:
Q  78 ttagtaaatgctatatttttcagcaatgatatgctcatcagt 119  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10180184 ttagtaaatgctataattttcagtaatgatatactcatcagt 10180225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 10256299 - 10256340
Alignment:
Q  78 ttagtaaatgctatatttttcagcaatgatatgctcatcagt 119  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10256299 ttagtaaatgctataattttcagtaatgatatactcatcagt 10256340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 10516630 - 10516706
Alignment:
Q  319 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 398  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   | ||| ||||| ||| || ||||||||||||||    
T  10516630 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---agtaatcactgatgacctatgctttccagcttt 10516706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 10123754 - 10123790
Alignment:
Q  363 aatattaaccactgctgagc-tttgctttccagcttt 398  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10123754 aatattaaccactgctgagcttttgctttccagcttt 10123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 10256523 - 10256559
Alignment:
Q  363 aatattaaccactgctgagc-tttgctttccagcttt 398  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10256523 aatattaaccactgctgagcttttgctttccagcttt 10256559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 388
Target Start/End: Original strand, 10259874 - 10259930
Alignment:
Q  332 ttgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgct 388  Q
    ||||||||||||||||| | ||||| ||||||||||||| || || ||| |||||||    
T  10259874 ttgtatcaattattttgaaggatgtgggtccaatattaaacaatgatgacctttgct 10259930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University