View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1554_high_2 (Length: 347)
Name: NF1554_high_2
Description: NF1554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1554_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 12814139 - 12814421
Alignment:
| Q |
8 |
caccacagaccacaaccttccctccaaatggaattgttttattttttgcgtccacctctttcattatctctctgaaggttctatcaacggcctcaaagca |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12814139 |
caccaaagaccacaaccttccctccaaatggaattgttttatttttcgcgtccacctccttcattatgtctctgaaggttctatcaacggcctcaaagca |
12814238 |
T |
|
| Q |
108 |
aaatcgatgcaacattggtgcttcatcccatattataagcttggctttcactatcaatttcccaaggggggaatctagttcaatggtacatgtagaagat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
12814239 |
aaatcgatgcaacattggtgcttcatcccatattataagcttggctttcactatcaatttcccaaggagggaatctggttcaatggtacatgtagaagat |
12814338 |
T |
|
| Q |
208 |
tcatttattagtagaggaaagccaaacctcgaatgtgttgtcctcccccctggtattaacaatgcagctatgcctgatgatgt |
290 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12814339 |
tcatttattagtagaggaatgcaaaacctcgaatgtgttgtccttccccctggtattaacaatgcagttatgcctgatgatgt |
12814421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 16969099 - 16968824
Alignment:
| Q |
8 |
caccacagaccacaaccttccctccaaatggaattgttttattttttgcgtccacctctttcattatctctctgaaggttctatcaacggcctcaaagca |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||| || |||||| ||||||||||| |
|
|
| T |
16969099 |
caccaaagaccacaaccttccctccaaatggaatttttttatttttcaggtccacctccttcattatgtctcaaaa------atcaacagcctcaaagca |
16969006 |
T |
|
| Q |
108 |
aaatcgatgcaacattggtgcttcatcccatattataagcttggctttcactatcaatttcccaaggggggaatctagttcaatggtacatgtagaagat |
207 |
Q |
| |
|
||| | ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
16969005 |
aaacctatgcatcattggtgcttcatcctatattataagcttggctttcactactaatttcccaaggggggaatccggttcaatggtacacgtagaagat |
16968906 |
T |
|
| Q |
208 |
tcatttattagtagaggaaagccaaacctcgaatgtgttgtcctcccccctggtattaacaatgcagctatgcctgatgatg |
289 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||| | |||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
16968905 |
tcatttattagtacaggaatgcaaaacctcgaatgggctgtccttccacctggtattaacaatgcagctatgcctgatgatg |
16968824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University