View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1554_high_5 (Length: 258)
Name: NF1554_high_5
Description: NF1554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1554_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 49684981 - 49684736
Alignment:
| Q |
13 |
aatatatttaaccgaaaatgaaccgccaaataaccaacaagtactagcaattcaacagcttgaacttgttcagtaatgcgttgtttttcttttcttatta |
112 |
Q |
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| T |
49684981 |
aatatatttaaccgaaaaagaaccgccaaataatcaacaagtactagcaattcaacggcttgaacttgttcagtaatgcattgtttttcttttcttatta |
49684882 |
T |
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| Q |
113 |
agaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaaaccctaaagct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684881 |
agaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaaaccctaaagct |
49684782 |
T |
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| Q |
213 |
attatcatcaccaacagcaccactgctgaacatagagctacccttt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684781 |
attatcatcaccaacagcaccactgctgaacatagagctacccttt |
49684736 |
T |
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