View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1554_low_11 (Length: 251)
Name: NF1554_low_11
Description: NF1554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1554_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 12844420 - 12844269
Alignment:
| Q |
1 |
gataccttatttttggggcaagctattatggcaaacttgtggtctttaaagaccatcatgcgctgttttgagctggcttatgggcttaaggtcaacttct |
100 |
Q |
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| T |
12844420 |
gataccttatttttggggcaagctattatggcaaacttgtggtctttaaagaccatcatgcgttgttttgagctggcttctgggcttaaggtcaacttcg |
12844321 |
T |
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| Q |
101 |
ccaagagctatgtcatgggcgtgaatgtggggagcgagtttcttgcattggc |
152 |
Q |
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| T |
12844320 |
ccaagagttatgttatgggggtgaatgtggggagcgattttcttgcactggc |
12844269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 12844150 - 12844093
Alignment:
| Q |
150 |
ggctgggatcctggggtaataagtatattagcctaggtggtagggtggtcctccttaa |
207 |
Q |
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| T |
12844150 |
ggctgggatcatggggtaataagtatattagcctaggtggtagggtggtcctccttaa |
12844093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 12843776 - 12843809
Alignment:
| Q |
150 |
ggctgggatcctggggtaataagtatattagcct |
183 |
Q |
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| T |
12843776 |
ggctgggatcctggggtaataagtatattagcct |
12843809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 29681205 - 29681332
Alignment:
| Q |
1 |
gataccttatttttggggcaagctattatggcaaacttgtggtctttaaagaccatcatgcgctgttttgagctggcttatgggcttaaggtcaacttct |
100 |
Q |
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| T |
29681205 |
gatactttattcttggggaaagctactatgacgaacttgtggtctcttaaaaccatcctccgctgttttgagcttgcttcgggcctcaaggttaatttct |
29681304 |
T |
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| Q |
101 |
ccaagagctatgtcatgggcgtgaatgt |
128 |
Q |
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| T |
29681305 |
ctaagagttatgtgatgggggtgaatgt |
29681332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 10993186 - 10993259
Alignment:
| Q |
158 |
tcctggggtaataagtatattagcctaggtggtagggtggtcctccttaactctgtcctcaatgttatccctat |
231 |
Q |
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| T |
10993186 |
tcctgggggtataagtatgttaatcttggtggtagggttgttctcctgaactctgtcctcaatgcgatccctat |
10993259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 29681478 - 29681547
Alignment:
| Q |
152 |
ctgggatcctggggtaataagtatattagcctaggtggtagggtggtcctccttaactctgtcctcaatg |
221 |
Q |
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| T |
29681478 |
ctgggctcctggggggataagtatgttagtctcggtggtagagttgttctccttaactccgtcctcaatg |
29681547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 36651645 - 36651569
Alignment:
| Q |
152 |
ctgggatcctggggtaataagtatattagcctaggtggtagggtggtcctccttaactctgtcctcaatgttatccc |
228 |
Q |
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| T |
36651645 |
ctgggctcctgggaaaataaatatgttagtcttggtggtagagttgtcctcctgaactccgtcctcaatgttatccc |
36651569 |
T |
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